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Detailed information on CNT30616920

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT002444, E-value = 4e-150

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30675397	Sesamum indicum	Setaria viridis	24.36	75.32	84.87	238	forward
CNT30524664	Sesamum indicum	Setaria italica	53.22	37.98	87.5	520	reverse complement
CNT30639555	Sesamum indicum	Nymphaea colorata	54.15	30.97	88.85	529	reverse complement
CNT30536068	Sesamum indicum	Eucalyptus grandis	53.63	15.21	88.93	524	forward
CNT30513456	Sesamum indicum	Juglans regia	53.22	16.38	90.38	520	reverse complement
CNT30500477	Sesamum indicum	Coffea canephora	53.63	28.78	91.22	524	reverse complement
CNT30269781	Sesamum indicum	Chenopodium quinoa	53.63	17.73	88.74	524	reverse complement
CNT30730500	Sesamum indicum	Corchorus capsularis	53.63	44.14	90.08	524	reverse complement
CNT30630109	Sesamum indicum	Vigna unguiculata	53.63	16.62	89.31	524	reverse complement
CNT30196411	Sesamum indicum	Pisum sativum	53.53	41.34	86.81	523	reverse complement
CNT30710098	Sesamum indicum	Glycine max	18.83	58.6	91.3	184	forward
CNT30638683	Sesamum indicum	Capsicum annuum	40.12	75.97	89.8	392	forward
CNT3090649	Sesamum indicum	Solanum tuberosum	53.63	19.17	90.84	524	reverse complement
CNT30190954	Sesamum indicum	Secale cereale	53.43	59.18	88.12	522	forward
CNT30225309	Sesamum indicum	Hordeum vulgare	52.2	42.32	85.69	510	reverse complement
CNT30401184	Sesamum indicum	Triticum turgidum	53.43	40.4	87.74	522	forward
CNT3088853	Sesamum indicum	Vigna radiata	23.95	57.78	86.32	234	forward
CNT30511396	Sesamum indicum	Solanum lycopersicum	23.85	25.46	86.7	233	reverse complement
CNT30554621	Sesamum indicum	Oryza glaberrima	18.22	82.79	90.45	178	reverse complement
CNT30441975	Sesamum indicum	Aegilops tauschii	53.43	65.5	87.93	522	reverse complement
CNT30248027	Sesamum indicum	Avena sativa	53.02	53.18	86.29	518	forward
CNT30668159	Sesamum indicum	Triticum dicoccoides	35.31	48.32	87.54	345	reverse complement
CNT30310298	Sesamum indicum	Camelina sativa	53.63	34.36	90.08	524	forward
CNT3062651	Sesamum indicum	Arabidopsis lyrata	39.2	46.03	88.51	383	forward
CNT3082954	Sesamum indicum	Brassica juncea	20.27	16.78	85.86	198	reverse complement
CNT30136065	Sesamum indicum	Lolium perenne	39.51	60.12	90.16	386	reverse complement
CNT30609809	Sesamum indicum	Gossypium raimondii	27.53	63.29	84.39	269	reverse complement
CNT3068134	Sesamum indicum	Leersia perrieri	34.39	92.82	82.74	336	forward
CNT30206293	Sesamum indicum	Helianthus annuus	53.63	23.85	90.84	524	reverse complement
CNT30126841	Sesamum indicum	Corymbia citriodora	33.78	88.71	87.88	330	reverse complement
CNT30623039	Sesamum indicum	Daucus carota	25.38	94.66	93.55	248	forward
CNT30689044	Sesamum indicum	Triticum urartu	53.43	19.36	88.12	522	reverse complement
CNT30720907	Sesamum indicum	Triticum spelta	53.43	51.13	88.12	522	forward
CNT30363557	Sesamum indicum	Sorghum bicolor	35.52	96.93	89.91	347	forward
CNT30370808	Sesamum indicum	Oryza glumipatula	18.22	82.03	91.01	178	reverse complement
CNT30154922	Sesamum indicum	Prunus persica	52.92	30.61	87.81	517	forward
CNT30412183	Sesamum indicum	Papaver somniferum	53.63	18.61	90.08	524	reverse complement
CNT30646402	Sesamum indicum	Cannabis sativa	54.04	41.74	84.85	528	forward
CNT30319706	Sesamum indicum	Asparagus officinalis	53.63	18.23	90.08	524	reverse complement
CNT30332807	Sesamum indicum	Dioscorea rotundata	53.63	31.72	90.27	524	forward
CNT30102929	Sesamum indicum	Oryza rufipogon	53.74	34.49	87.05	525	forward
CNT30574740	Sesamum indicum	Oryza barthii	27.43	54.47	88.81	268	reverse complement
CNT30585638	Sesamum indicum	Echinochloa crusgalli	40.33	25.45	90.1	394	forward

Expression of CNT30616920

Peptides detected in this lncRNA

>peptide 1 (62 aa)
HILDGTDALFYNNILHMHINMNVYMQVYDYTELYSCLVFGYKMILLNTPHICDKYFKMYPEC*

>peptide 2 (56 aa)
MFMLLKPTFSLLLCPPLLARGLPSKAECSPTDVFLHPTASADRFAPFIFGARALDQ*

>peptide 3 (52 aa)
MYFYIPQLQQIASPRSSSAQERLISELLCTPSRVAASRQTSWLSLHPYLLYH*

>peptide 4 (75 aa)
MERVKLLRERREIFTCCPSITPFGLILGPDSPSVDEPCGGTLRFSGHWILANVYVTKADILAFALSTAARAGASL*

Sequence

>CNT30616920
GCACATTTTGGATGGTACGGATGCACTTTTCTATAATAATATTTTGCATATGCACATAAACATGAATGTGTACATGCAAGTGTATGACTACACAGAGTTG
TACTCCTGTTTGGTATTTGGATACAAGATGATACTCTTGAATACTCCTCATATATGTGACAAATACTTCAAAATGTATCCAGAATGTTAACAAAAGAAGT
TTTTAATAAAACGTTCAATTTTTTCCTTACATATAATAAATGTGGTCAAGGTTAGTGGTCGAAGGTGTTATGTCCTTCTTTGCTTTTAGCGGTTATAAAT
TTTGCAAGTAATATATACATTGGTTTGGTTGGGTTATGATAAAATAAGGGGGAAATGGAGAGGGTTAAGCTGTTAAGGGAAAGAAGAGAGATATTCACCT
GTTGTCCATCGATTACACCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCGGAGGAACCCTTAGGTTTTCAGGGCATTGGAT
TCTCGCCAATGTTTATGTTACTAAAGCCGACATTCTCGCTTTTGCTTTGTCCACCGCTGCTCGCGCGGGGGCTTCCCTCTAAGGCGGAATGCTCCCCTAC
CGATGTATTTTTACATCCCACAGCTTCAGCAGATCGCTTCGCCCCGTTCATCTTCGGCGCAAGAGCGCTTGATCAGTGAGCTATTATGCACTCCTTCAAG
AGTGGCTGCTTCTAGGCAAACCTCGTGGCTGTCTCTGCACCCCTACCTCCTTTACCACTGAGTGATCATTTAGGGGCCTTAGCTTGTTTCCCTCTCGACG
ATTAATCTATGATCCCCCATCATCTCACTTGCCAACCTTGACCCCTGTTATTTGGAGGTCATATCTAGTATTTAGAGTTTGCCTCGATTTGGTACCGCTC
TCACTGATGTGTGTAGGAATCTTGAGCCAAACCCAAGCTGGAGAATAAAACAGCACAAGTCACAGGCTTGCCTTCAG