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Detailed information on CNT30364730


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003894, E-value = 1e-164

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696475Sorghum bicolorOryza sativa70.3715.5998.5399reverse complement
CNT30676981Sorghum bicolorSetaria viridis60.1454.3992.67341reverse complement
CNT30639555Sorghum bicolorNymphaea colorata65.2621.6694.05370reverse complement
CNT30536068Sorghum bicolorEucalyptus grandis69.8411.592.42396forward
CNT30730500Sorghum bicolorCorchorus capsularis69.8433.3694.19396reverse complement
CNT30632450Sorghum bicolorVigna unguiculata69.8417.8192.93396reverse complement
CNT30196411Sorghum bicolorPisum sativum69.1430.9991.84392reverse complement
CNT30638683Sorghum bicolorCapsicum annuum66.1472.6789.33375forward
CNT3090649Sorghum bicolorSolanum tuberosum69.8414.4892.68396reverse complement
CNT30190954Sorghum bicolorSecale cereale70.3745.2498.75399forward
CNT30309040Sorghum bicolorTriticum aestivum70.3795.2399399forward
CNT30225309Sorghum bicolorHordeum vulgare70.3733.1195.74399reverse complement
CNT30399645Sorghum bicolorTriticum turgidum70.3717.4599399reverse complement
CNT30444225Sorghum bicolorAegilops tauschii70.3736.1498.5399reverse complement
CNT30248027Sorghum bicolorAvena sativa67.5539.3297.13383forward
CNT30668159Sorghum bicolorTriticum dicoccoides70.3755.8895.24399reverse complement
CNT30310298Sorghum bicolorCamelina sativa70.0226.0394.96397forward
CNT30136065Sorghum bicolorLolium perenne70.3762.1598.5399reverse complement
CNT3018333Sorghum bicolorZea mays70.3713.9899.25399reverse complement
CNT30609809Sorghum bicolorGossypium raimondii48.6864.9488.04276reverse complement
CNT30655263Sorghum bicolorRosa chinensis67.3721.1691.62382reverse complement
CNT30206293Sorghum bicolorHelianthus annuus69.8418.0293.69396reverse complement
CNT30713553Sorghum bicolorMalus domestica golden67.3756.6894.5382reverse complement
CNT30627950Sorghum bicolorDaucus carota53.7970.9392.13305reverse complement
CNT30722943Sorghum bicolorTriticum spelta70.3719.8298.75399reverse complement
CNT30154922Sorghum bicolorPrunus persica67.3722.6291.88382forward
CNT30411255Sorghum bicolorPapaver somniferum69.3112.9494.4393forward
CNT30705531Sorghum bicolorPrunus avium49.3810090.71280forward
CNT30319706Sorghum bicolorAsparagus officinalis69.3113.6794.66393reverse complement
CNT30332809Sorghum bicolorDioscorea rotundata69.4957.0294.42394forward
CNT30102929Sorghum bicolorOryza rufipogon70.3726.2295.99399forward
CNT30585638Sorghum bicolorEchinochloa crusgalli70.3725.7899.25399forward
CNT30604668Sorghum bicolorOryza punctata61.0278.8297.69346reverse complement

Expression of CNT30364730

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MFSLLKPTFSLPLRRPPLSRLLPSKAERSPTDAF*

Sequence

>CNT30364730
ACACAGGGTCACCTTGTGTCCTTAAACCTATAACCATCTTTCGGCTAACCTAGCCTCCTCCGTCCCTCCGTACCAACAAGGGTTAGTACAGGAATATTGA
CCTGTTGTCCATCGACTACGCCTTTCAGTCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCGGAGGAAACCTTGGGTTTTCGGGGCATTG
GATTCTCACCAATGTTTTCGTTACTCAAGCCGACATTCTCGCTTCCGCTTCGTCGACCCCCGCTTTCGCGTTTGCTTCCCTCTAAGGCGGAACGCTCCCC
TACCGATGCATTTTGACATCCCACAGCTTCGGCAGATCGCTTAGCCCCGTTCATCTTCAGCGCAAGGGCGCTCGATCAGTGAGCTATTACGCACTCTTTA
AATCCACTATATTACGATCAACCATTGATTGCTTTCTTTTTATCCGGATACCGCCGCAGATCAAATAGAATAGATCTCTTGCGGTGACATGACAATTAGA
ATATCTAAATTATTTGAATGCGAACTTCTCGTTCTAAGCGTTGAAAGGGGTGAGGGCTGGCTGAGTG