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Detailed information on CNT30627950


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONVVIT000851, E-value = 3e-66

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677056Daucus carotaSetaria viridis87.2131.6287.2375forward
CNT30521637Daucus carotaSetaria italica67.9157.4894.86292forward
CNT30639555Daucus carotaNymphaea colorata65.5816.5196.45282forward
CNT30536068Daucus carotaEucalyptus grandis99.312.495.08427reverse complement
CNT30513456Daucus carotaJuglans regia99.313.4596.02427forward
CNT30500477Daucus carotaCoffea canephora95.8122.6295.39412forward
CNT30617317Daucus carotaSesamum indicum74.1995.896.55319forward
CNT30269781Daucus carotaChenopodium quinoa87.2112.6996.8375forward
CNT30730500Daucus carotaCorchorus capsularis98.635.7296.46424forward
CNT30630109Daucus carotaVigna unguiculata98.8413.4895.06425forward
CNT30196411Daucus carotaPisum sativum83.9528.5493.35361forward
CNT30712450Daucus carotaGlycine max58.3788.3892.43251forward
CNT30638683Daucus carotaCapsicum annuum66.9855.8193.4288reverse complement
CNT3090649Daucus carotaSolanum tuberosum96.0515.1196.85413forward
CNT30178555Daucus carotaSecale cereale100.2351.1992.11431forward
CNT30225309Daucus carotaHordeum vulgare88.631.6289.76381forward
CNT30399645Daucus carotaTriticum turgidum88.616.6693.18381forward
CNT30562726Daucus carotaActinidia chinensis46.5150.3894.5200forward
CNT30444225Daucus carotaAegilops tauschii88.634.5192.65381forward
CNT30668159Daucus carotaTriticum dicoccoides84.1950.790.33362forward
CNT30310298Daucus carotaCamelina sativa9025.3896.64387reverse complement
CNT30136065Daucus carotaLolium perenne87.4458.5792.55376forward
CNT30655263Daucus carotaRosa chinensis97.9123.3292.64421forward
CNT30208936Daucus carotaHelianthus annuus99.321.1896.96427forward
CNT30713553Daucus carotaMalus domestica golden99.5363.596.26428forward
CNT30688464Daucus carotaTriticum urartu100.2323.4292.58431forward
CNT30722943Daucus carotaTriticum spelta100.2321.4192.11431forward
CNT30364730Daucus carotaSorghum bicolor70.9353.7992.13305reverse complement
CNT30154922Daucus carotaPrunus persica99.325.2893.68427reverse complement
CNT30411255Daucus carotaPapaver somniferum99.314.0694.85427reverse complement
CNT30705531Daucus carotaPrunus avium63.4997.594.14273reverse complement
CNT30319706Daucus carotaAsparagus officinalis99.314.8696.49427forward
CNT30332807Daucus carotaDioscorea rotundata85.1222.1596.45366reverse complement
CNT30102893Daucus carotaOryza rufipogon89.327.2390.62384forward
CNT30585638Daucus carotaEchinochloa crusgalli88.624.6192.91381reverse complement
CNT30604668Daucus carotaOryza punctata83.9582.2390.58361forward

Expression of CNT30627950

Peptides detected in this lncRNA

>peptide 1 (53 aa)
SSVGERSALEGSTRASGSGRSGNENVGLSNANIGDNPMPRKPKGSSARFVHGG*

Sequence

>CNT30627950
ATTCATCGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCACCCGCGCGAGCGGTAGTGGACGAAGCGGAAACGAGAATGTCGGCTTGAGTAACGCAAACAT
TGGTGATAATCCAATGCCTCGAAAACCTAAGGGTTCCTCCGCAAGGTTCGTCCACGGAGGGTAAGTCAGGGCCTAAGATCAGGCCGAAAGGCGTAGTCGA
TGGACAACAGGTGAATATTCCTGTACTACCCCTTGTTGGTCCCGAGGGACGGAGGAGGCTAGGTTAGCCGAAAGATGGTTATCGGTTCAAGGACGTAAGG
TGACCCTGCTTTTTCAGGGTAAGAAGGGGTAGAGAAAATGCCTCGAGCCAATGTTCGAGTACCAGGCGCTACGGCGCTGAAGTAACCCATGCCATACTCC
CAGAAAAAGCTCGAACAACCTTCAACAAAA