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Detailed information on CNT3062651


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696475Arabidopsis lyrataOryza sativa82.8126.9195.94689reverse complement
CNT30677083Arabidopsis lyrataSetaria viridis50.658.892.4421reverse complement
CNT30524664Arabidopsis lyrataSetaria italica82.8150.3394.92689reverse complement
CNT30639555Arabidopsis lyrataNymphaea colorata82.8140.3496.81689reverse complement
CNT30536068Arabidopsis lyrataEucalyptus grandis82.2119.8695.91684forward
CNT30513456Arabidopsis lyrataJuglans regia82.2121.5597.95684reverse complement
CNT30378667Arabidopsis lyrataArabidopsis thaliana34.6225.7499.65288reverse complement
CNT30500477Arabidopsis lyrataCoffea canephora82.2137.5698.25684reverse complement
CNT30616920Arabidopsis lyrataSesamum indicum46.0339.288.51383forward
CNT30269781Arabidopsis lyrataChenopodium quinoa82.2123.1596.35684reverse complement
CNT30730500Arabidopsis lyrataCorchorus capsularis82.2157.6298.39684reverse complement
CNT30525072Arabidopsis lyrataPhaseolus vulgaris27.5253.6398.25229forward
CNT30630109Arabidopsis lyrataVigna unguiculata82.2121.797.66684reverse complement
CNT30202038Arabidopsis lyrataPisum sativum82.2160.1194.15684forward
CNT30503431Arabidopsis lyrataNicotiana attenuata68.2741.1398.94568forward
CNT30709956Arabidopsis lyrataGlycine max27.1650.3395.13226reverse complement
CNT3044711Arabidopsis lyrataPrunus dulcis29.9352.299.2249forward
CNT30638683Arabidopsis lyrataCapsicum annuum31.1350.1992.66259forward
CNT3090649Arabidopsis lyrataSolanum tuberosum82.2125.0298.1684reverse complement
CNT30193689Arabidopsis lyrataSecale cereale82.8155.7495.79689reverse complement
CNT30291213Arabidopsis lyrataTriticum aestivum82.8119.8395.79689reverse complement
CNT30225309Arabidopsis lyrataHordeum vulgare72.1249.7991.17600reverse complement
CNT30400299Arabidopsis lyrataTriticum turgidum82.8132.395.79689reverse complement
CNT30588765Arabidopsis lyrataMusa acuminata31.6137.6898.86263forward
CNT3088853Arabidopsis lyrataVigna radiata32.0965.9398.13267forward
CNT30511396Arabidopsis lyrataSolanum lycopersicum37.3833.9996.78311reverse complement
CNT30554009Arabidopsis lyrataOryza glaberrima36.355.4193.38302reverse complement
CNT30441550Arabidopsis lyrataAegilops tauschii58.4170.9593.83486reverse complement
CNT30248027Arabidopsis lyrataAvena sativa82.8170.7494.05689forward
CNT30664460Arabidopsis lyrataTriticum dicoccoides43.3999.7296.68361reverse complement
CNT30310298Arabidopsis lyrataCamelina sativa82.2144.8599.85684forward
CNT30612440Arabidopsis lyrataArabis alpina24.1689.3397.51201reverse complement
CNT30460907Arabidopsis lyrataSaccharum spontaneum82.8120.6895.94689reverse complement
CNT30136319Arabidopsis lyrataLolium perenne55.2980.8496.3460forward
CNT3018333Arabidopsis lyrataZea mays82.8124.1395.94689reverse complement
CNT3068134Arabidopsis lyrataLeersia perrieri39.390.3392.05327forward
CNT30655263Arabidopsis lyrataRosa chinensis81.4937.5694.4678reverse complement
CNT30206293Arabidopsis lyrataHelianthus annuus82.2131.1398.39684reverse complement
CNT30126841Arabidopsis lyrataCorymbia citriodora41.4792.7495.36345reverse complement
CNT30713553Arabidopsis lyrataMalus domestica golden25.7231.7598.13214reverse complement
CNT30689044Arabidopsis lyrataTriticum urartu82.8125.5695.94689reverse complement
CNT30720907Arabidopsis lyrataTriticum spelta82.8167.4895.65689forward
CNT30363927Arabidopsis lyrataSorghum bicolor32.9367.9995.62274reverse complement
CNT30596725Arabidopsis lyrataOryza meridionalis82.8119.9796.08689reverse complement
CNT30357533Arabidopsis lyrataLactuca sativa37.8630.9497.78315reverse complement
CNT30370808Arabidopsis lyrataOryza glumipatula2595.8597.6208reverse complement
CNT30154922Arabidopsis lyrataPrunus persica82.2140.594.01684forward
CNT30412183Arabidopsis lyrataPapaver somniferum82.2124.2997.81684reverse complement
CNT30646295Arabidopsis lyrataCannabis sativa75.8473.4695.56631reverse complement
CNT3056240Arabidopsis lyrataAmborella trichopoda28.3782.5297.46236reverse complement
CNT30319706Arabidopsis lyrataAsparagus officinalis82.2123.897.81684reverse complement
CNT30332807Arabidopsis lyrataDioscorea rotundata82.2141.497.81684forward
CNT30148090Arabidopsis lyrataBrachypodium distachyon82.8123.7296.08689forward
CNT30102929Arabidopsis lyrataOryza rufipogon82.6945.295.06688forward
CNT30576679Arabidopsis lyrataOryza barthii36.4257.7194.72303reverse complement
CNT30585638Arabidopsis lyrataEchinochloa crusgalli37.8620.3596.19315forward

Expression of CNT3062651

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MSSQLLRLNAFRGEPASSGFEWHFTPNHNSSADFSTSVGSDLHLVSPKLHPGHR*

>peptide 2 (65 aa)
LLRPSGPTRGSTGIFTCCPSTTPFGLILGPDSPSVDEPCGGTLGFSGHWILASASSTAARAVASP*

Sequence

>CNT3062651
CCTCCTCCGTCCCTCGGGACCAACAAGGGGTAGTACAGGAATATTCACCTGTTGTCCATCGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCC
TCCGTGGACGAACCTTGCGGAGGAACCCTTGGGTTTTCGGGGCATTGGATTCTCGCTTCCGCTTCGTCCACCGCCGCTCGCGCGGTTGCTTCCCCCTAAG
GCGGAACGCTCCCCTACCGATGCATTTTGACATCCCACAGCTTCGGCAGATCGCTTAGCCCCGTTCATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTA
TTACGCACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTGAGCGGTCATTTAGGGGCCTTAGC
TGGTGATCCGGGCTGTTTCCCTCTCGACGATGAAGCTTATCCCCCACCGTCTCACTGGCCGACCTTGACCCCAGTTATTTTGAGGTCATATCTAGTATTC
AGAGTTTGCCTCGATTTGGTACCGCTCTCGCGGCCCGCACCGAAACAGTGCTTTACCCCTAGATGTCCAGTCAACTGCTGCGCCTCAACGCATTTCGGGG
AGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCACCCCTAACCACAACTCATCCGCTGATTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGTTTCA
CCCAAGCTTCATCCTGGTCATAGATAGATCACCCAGGTTCGGGTCCATAAGCAGTGACAATTGCCCTATGAAGACTCGCTTTCGCTACGGCTCCGGTGGG
TTCCCTTAACCAAGCCACTGCCTATGAGTCGC