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Detailed information on CNT30618435


BLAST search results

BLAST vs Swiss-Prot:
sp|O64937|EF1A_ORYSJ, E-value = 1e-85

BLAST vs NONCODE:
NONMEST004097, E-value = 3e-88

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677582Sesamum indicumSetaria viridis70.8853.8787.36348forward
CNT30521187Sesamum indicumSetaria italica70.8826.7187.07348forward
CNT30546799Sesamum indicumIpomoea triloba70.8828.3489.94348forward
CNT30518094Sesamum indicumJuglans regia70.8837.1887.07348forward
CNT30698284Sesamum indicumQuercus lobata28.5148.9591.43140forward
CNT30371709Sesamum indicumArabidopsis thaliana65.1749.6985.62320forward
CNT30274113Sesamum indicumChenopodium quinoa61.148.0887300forward
CNT3020493Sesamum indicumCitrullus lanatus60.0819.1187.8295forward
CNT30727585Sesamum indicumCorchorus capsularis70.6725.7488.76347forward
CNT30380192Sesamum indicumManihot esculenta62.1213.3788.52305forward
CNT30525464Sesamum indicumPhaseolus vulgaris56.8249.3884.59279forward
CNT30629525Sesamum indicumVigna unguiculata56.8264.8886.38279forward
CNT30505987Sesamum indicumNicotiana attenuata46.8469.9186.52230forward
CNT30287202Sesamum indicumTriticum aestivum67.0145.7683.28329forward
CNT30224987Sesamum indicumHordeum vulgare54.7991.1985.5269forward
CNT30564256Sesamum indicumActinidia chinensis67.0128.2686.02329forward
CNT30588666Sesamum indicumMusa acuminata68.4369.1480.95336forward
CNT30541587Sesamum indicumBrassica napus70.8829.5985.06348forward
CNT30237858Sesamum indicumBrassica oleracea50.5155.4888.71248forward
CNT30509820Sesamum indicumSolanum lycopersicum44.8198.2187.27220forward
CNT30665783Sesamum indicumTriticum dicoccoides70.8838.285.34348forward
CNT30310177Sesamum indicumCamelina sativa70.883085.06348forward
CNT3078925Sesamum indicumBrassica juncea70.8829.7285.06348forward
CNT30598511Sesamum indicumFraxinus excelsior68.2351.4689.25335forward
CNT30449234Sesamum indicumSaccharum spontaneum70.8829.0286.78348forward
CNT3011290Sesamum indicumZea mays70.8825.3185.92348forward
CNT30608730Sesamum indicumGossypium raimondii50.3141.1790.69247forward
CNT30232362Sesamum indicumAnanas comosus57.8449.7483.8284forward
CNT30624959Sesamum indicumDaucus carota56.6281.7684.89278forward
CNT30685098Sesamum indicumTriticum urartu70.8823.6786.21348forward
CNT30350898Sesamum indicumEragrostis tef70.8831.2487.07348forward
CNT30480841Sesamum indicumArabidopsis halleri60.2947.6785.47296forward
CNT30368387Sesamum indicumSorghum bicolor70.8840.3285.92348forward
CNT30355521Sesamum indicumLactuca sativa70.8836.4885.06348forward
CNT30151899Sesamum indicumPrunus persica61.127.285.33300forward
CNT30706378Sesamum indicumPrunus avium67.4129.2986.71331forward
CNT3031228Sesamum indicumTheobroma cacao26.0751.6189.06128forward
CNT3052982Sesamum indicumAmborella trichopoda65.9924.7786.11324forward
CNT3024315Sesamum indicumPopulus trichocarpa58.0437.3585.96285forward
CNT3037774Sesamum indicumCucumis melo70.8845.0287.07348forward
CNT30100761Sesamum indicumOryza rufipogon67.0157.4286.32329forward
CNT30579541Sesamum indicumEchinochloa crusgalli51.1243.5889.24251forward
CNT30496615Sesamum indicumDigitaria exilis84.9345.9886.81417forward
CNT30594443Sesamum indicumEragrostis curvula70.8829.9787.36348forward
CNT30113122Sesamum indicumFicus carica70.8841.9385.34348forward
CNT3050685Sesamum indicumCucumis sativus69.4575.7885.34341forward

Expression of CNT30618435

Peptides detected in this lncRNA

>peptide 1 (49 aa)
SILQELGLLLKLLTRPPVNLGHKFSKLNSNVGSVTIKHRGISISNLTRS*

>peptide 2 (48 aa)
MASWCISTDLTSVVKPEGPKVTTIPGLRIPVSTRPTGTVPIPPILYTS*

>peptide 3 (33 aa)
PFFKNLGSFSSSLPDRLSILVTSSANLTAMWEV*

Sequence

>CNT30618435
CTCCATTCTTCAAGAACTTGGGCTCCTTCTCAAGCTCCTTACCAGACCGCCTGTCAATCTTGGTCACAAGTTCAGCAAACTTAACAGCAATGTGGGAAGT
GTGACAATCAAGCACCGGGGCATATCCATTTCCAATCTGACCAGGAGTTAGAGGCAACATAACCACGCTTGAGATCCTTAACAGCGACGTTCTTCACGTT
GAACCCAACATTGTCACCAGGAAGAGCCTCTTGCATGGCTTCATGGTGCATCTCAACTGACTTAACTTCAGTGGTCAAACCAGAGGGACCGAAGGTCACA
ACCATACCAGGCTTGAGGATACCAGTCTCAACACGACCAACAGGGACAGTACCAATACCACCAATCTTGTACACATCCTGAAGTGGGAGTCGCAGGGGCT
TGTCTGAGGGCCTCTTGGGCTCCTGGATCATGTCGAGAGCCTCGAGGAGAGTTGGGCCCTTGTACCAATCCAGGTTGGTGGATCTCTCAAT