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Detailed information on CNT30224987


BLAST search results

BLAST vs Swiss-Prot:
sp|Q03033|EF1A_WHEAT, E-value = 2e-63

BLAST vs NONCODE:
NONBNAT001751, E-value = 2e-75

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30377782Hordeum vulgareArabidopsis thaliana91.1926.6390.33269forward
CNT30618435Hordeum vulgareSesamum indicum91.1954.7985.5269forward
CNT30274113Hordeum vulgareChenopodium quinoa94.2444.5586.69278forward
CNT3020493Hordeum vulgareCitrullus lanatus97.2918.5986.41287forward
CNT30727585Hordeum vulgareCorchorus capsularis94.2420.6288.49278forward
CNT30525464Hordeum vulgarePhaseolus vulgaris96.2750.2784.86284forward
CNT30629544Hordeum vulgareVigna unguiculata97.2937.9685.37287forward
CNT30505987Hordeum vulgareNicotiana attenuata72.8865.3589.77215forward
CNT30160120Hordeum vulgarePistacia vera97.2923.0988.15287forward
CNT30287202Hordeum vulgareTriticum aestivum92.8838.1191.61274forward
CNT30588666Hordeum vulgareMusa acuminata92.255.9781.99272forward
CNT30509820Hordeum vulgareSolanum lycopersicum73.5696.8886.18217forward
CNT30598015Hordeum vulgareFraxinus excelsior66.7839.2491.37197forward
CNT3015866Hordeum vulgareZea mays96.2739.5589.79284forward
CNT30608730Hordeum vulgareGossypium raimondii86.142.3385.83254forward
CNT30232362Hordeum vulgareAnanas comosus72.8837.6584.19215forward
CNT30624959Hordeum vulgareDaucus carota94.2481.7685.25278forward
CNT30685098Hordeum vulgareTriticum urartu10020.0796.27295forward
CNT30480841Hordeum vulgareArabidopsis halleri91.1943.3288.1269forward
CNT30355843Hordeum vulgareLactuca sativa97.2934.0585.02287forward
CNT30151899Hordeum vulgarePrunus persica10026.7586.1295forward
CNT3052982Hordeum vulgareAmborella trichopoda93.921.1884.48277forward
CNT3037774Hordeum vulgareCucumis melo97.2937.1387.11287forward
CNT30147611Hordeum vulgareBrachypodium distachyon31.8615.6797.8794forward
CNT30113122Hordeum vulgareFicus carica88.1431.3386.15260forward
CNT3050685Hordeum vulgareCucumis sativus91.1959.7881.41269forward

Expression of CNT30224987

Peptides detected in this lncRNA

>peptide 1 (74 aa)
LDATNPRFRSLTATFLTLKPTLSPGSASRRDSWCISTDLTSVVKPVGPKVTTIPGLMTPVSTRPTGTVPMPPIL*

>peptide 2 (86 aa)
VGCNKPTLQILDGNVLDIEADIVTGKRLQERLMVHLNRLDLSCQTSGPKGNNHTRLDDTSLNTAHRHSSNATNLVNVLKGKTQGLV*

Sequence

>CNT30224987
AGTTGGATGCAACAAACCCACGCTTCAGATCCTTGACGGCAACGTTCTTGACATTGAAGCCGACATTGTCACCGGGAAGCGCCTCCAGGAGAGACTCATG
GTGCATCTCAACAGACTTGACCTCAGTTGTCAAACCAGTGGGCCCAAAGGTAACAACCATACCAGGCTTGATGACACCAGTCTCAACACGGCCCACAGGC
ACAGTTCCAATGCCACCAATCTTGTAAACGTCCTGAAGGGGAAGACGCAGGGGCTTGTCTGAGGGCCTCTTGGGCTCATTGATCTGGTCAAGAGC