Detailed information on CNT3011290


BLAST search results

BLAST vs Swiss-Prot:
sp|P50378|EFTU_GONPE, E-value = 2e-13

BLAST vs NONCODE:
NONBNAT007048, E-value = 3e-96

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677582Zea maysSetaria viridis45.7597.3791.1629forward
CNT30618435Zea maysSesamum indicum25.3170.8885.92348forward
CNT30727591Zea maysCorchorus capsularis62.4731.8184.52859forward
CNT30629687Zea maysVigna unguiculata23.2716.286.56320forward
CNT30712080Zea maysGlycine max24.7346.9685.88340forward
CNT30287202Zea maysTriticum aestivum34.1865.3788.3470forward
CNT30440628Zea maysAegilops tauschii26.0448.7787.71358forward
CNT30665783Zea maysTriticum dicoccoides59.2789.4686.87815forward
CNT30598511Zea maysFraxinus excelsior34.9873.8986.07481forward
CNT30685754Zea maysTriticum urartu62.4751.7887.43859forward
CNT3024873Zea maysPopulus trichocarpa27.4967.0287.04378forward
CNT30100761Zea maysOryza rufipogon42.91102.9786.95590forward
CNT30116111Zea maysOryza nivara24.4438.490.18336forward

Expression of CNT3011290

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MSPPPWAWWVSSSPYQHHRSSGTLAPSQAPCQSACRSW*

>peptide 2 (35 aa)
MRLPSQSLHNVPWSIWEWLHPSKKQNTITLIIHGT*

>peptide 3 (83 aa)
MTPVSTRPTGTVPIPPILYTSWRGRRRGLSEGLLGSVIWSRASSRVGPLYQSRLVDLSIMLSPSKPEMGTKAILSGLYPTFLR*

>peptide 4 (72 aa)
MSRTANLPRGGYAENVSTTMGLVGIIFTIPASPFFRNFGSFSSSLPERLSILVMSSANLTAMWEVWQSSTGA*

Sequence

>CNT3011290
GTTAACATATAGCTCTTACAGCATTCTTGTATTGCAGAAGGTGAAATAGCAACAAGGTACCAAATAAATAGATAAAAGTGCACAGGCTAACAGAGCTCAA
CAGTTCACACAATAACAGCAACGACCACAAACAAAACTTGTAATGATGAAAACTAGGTATTGCTAAAGCAGGCGCAGGATCGCATCATTTCTTCTTGGCA
GCAGCCTTGGTCACCTTGGCGCCGGTTGGGTCCTTCTTCTCCACACTCTTGATAACTCCAACAGCAACCGTCTGCCTCATGTCACGGACAGCAAACCTAC
CAAGGGGAGGATACGCTGAGAATGTCTCCACCACCATGGGCTTGGTGGGTATCATCTTCACCATACCAGCATCACCGTTCTTCAGGAACTTTGGCTCCTT
CTCAAGCTCCTTGCCAGAGCGCCTGTCGATCTTGGTAATGAGCTCAGCAAACTTGACAGCGATGTGGGAGGTGTGGCAGTCCAGCACTGGGGCATAGCCG
TTGCCAATCTGCCCAGGGTGGTTCATGATGATGACCTGGGAGGGTCATCCTTGGAGTTGGAGGCCACAAACCCACGCTTGAGATCCTTGACAGCAACGTT
CTTCACGTTGAAGCCAACATTGTCACCCGGAAGAGCCTCCTGAAGCGCCTCGTGGTGCATCTCAACAGACTTCACCTCGGTAGTCAGGCCAGTTGGACCA
AAGGTGACAACCATACCAGGCTTGATGACACCAGTCTCCACACGACCAACCGGTACAGTTCCAATACCACCAATCTTGTACACATCCTGGAGGGGCAGAC
GCAGGGGCTTGTCTGAAGGCCTCTTGGGCTCGGTGATCTGGTCAAGAGCCTCAAGCAGGGTTGGGCCTTTGTACCAGTCAAGGTTGGTGGACCTCTCAAT
CATGTTGTCACCCTCAAAACCAGAAATGGGAACAAAGGCAATCTTATCAGGGTTGTACCCAACTTTCTTGAGGTAGGATGAGACTTCCTTCACAATCTCT
TCATAACGTGCCTTGGAGTATTTGGGAGTGGTTGCATCCATCTAAAAAACAGAACACCATTACTTTGATTATCCACGGTACATAGATAGTATATGCTTGG
AACAGAATAATACTATTAGCTTAATGGAATAATAAAGGACATGAACAGCAGGCAAACTGTGGATGTGATACCACAGCAGTGACAACTACACATAAATAGG
TAGATCACCGTGTATCATAATTCATATATATGTAGCCAACATAGCAAGTCCTGGATGTAACAAATAAGAAGCATATGACAAAATACAGAGCTAATCAGGT
ATATGTCAATGCATCCTACTAATAAAACTGCAGTACCAGCACATTAAATAACCATACCAATCAAATGAAGATAAA