Detailed information on CNT3031228


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672934Theobroma cacaoSetaria viridis45.5620.4791.15113forward
CNT30546688Theobroma cacaoIpomoea triloba45.9726.5192.98114forward
CNT30378189Theobroma cacaoArabidopsis thaliana45.9727.690.35114forward
CNT30618435Theobroma cacaoSesamum indicum51.6126.0789.06128forward
CNT30730167Theobroma cacaoCorchorus capsularis46.3714.7194.78115forward
CNT30195181Theobroma cacaoPisum sativum43.1522.5791.59107forward
CNT3093993Theobroma cacaoSolanum tuberosum45.9721.8487.72114forward
CNT30288144Theobroma cacaoTriticum aestivum44.763087.39111forward
CNT30224124Theobroma cacaoHordeum vulgare44.7637.3790.09111forward
CNT30386294Theobroma cacaoTriticum turgidum44.7630.1687.39111forward
CNT30562819Theobroma cacaoActinidia chinensis45.5622.4288.5113forward
CNT30509820Theobroma cacaoSolanum lycopersicum5055.3691.13124forward
CNT30658093Theobroma cacaoTriticum dicoccoides44.7625.487.39111forward
CNT30608730Theobroma cacaoGossypium raimondii51.6121.3392.97128forward
CNT30646927Theobroma cacaoRosa chinensis43.9532.4492.66109forward
CNT30685477Theobroma cacaoTriticum urartu44.7616.3290.09111forward
CNT30338600Theobroma cacaoEragrostis tef44.7623.1290.09111forward
CNT30363108Theobroma cacaoSorghum bicolor38.3111.8889.4795forward
CNT30570869Theobroma cacaoVitis vinifera47.1835.1489.74117forward
CNT30645139Theobroma cacaoCannabis sativa45.1640.5891.96112forward
CNT30323623Theobroma cacaoAsparagus officinalis42.3433.6585.71105forward
CNT30120727Theobroma cacaoCitrus clementina47.1821.2791.45117forward
CNT30116334Theobroma cacaoOryza nivara44.7618.289.19111forward
CNT30594407Theobroma cacaoEragrostis curvula44.7639.0890.09111forward

Expression of CNT3031228

Peptides detected in this lncRNA

>peptide 1 (62 aa)
LTLNPTLSPGRASWRASWCISTDFTSVVRPVGPKVTTIPGLRVPVIMFLIKSRCPGASMTVQ*

>peptide 2 (81 aa)
LNIEPNIITRESLLEGFMVHLNRLYFSGQTSGAKGHDHTRLKGTSNHVLDKVTMSRGIDDSAVVFCGLKLPQCNINGNTTFA

Sequence

>CNT3031228
TCTTAACATTGAACCCAACATTATCACCAGGGAGAGCCTCCTGGAGGGCTTCATGGTGCATCTCAACAGACTTTACTTCAGTGGTCAGACCAGTGGGGCC
AAAGGTCACGACCATACCAGGCTTAAGGGTACCAGTAATCATGTTCTTGATAAAGTCACGATGTCCAGGGGCATCGATGACAGTGCAGTAGTATTTTGTG
GTCTCAAACTTCCACAGTGCAATATCAATGGTAATACCACGTTCGCGC