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Detailed information on CNT30237858


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8W4H7|EF1A2_ARATH, E-value = 6e-93

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30618435Brassica oleraceaSesamum indicum55.4850.5188.71248forward
CNT30629687Brassica oleraceaVigna unguiculata64.8814.6886.55290forward
CNT30505987Brassica oleraceaNicotiana attenuata51.2369.687.34229forward
CNT30637620Brassica oleraceaCapsicum annuum57.0513.2887.45255forward
CNT30509929Brassica oleraceaSolanum lycopersicum32.8968.6993.2147forward
CNT30706335Brassica oleraceaPrunus avium92.1736.6288.11412forward
CNT3053027Brassica oleraceaAmborella trichopoda42.2843.6588.36189forward
CNT30147611Brassica oleraceaBrachypodium distachyon42.2831.591.01189forward
CNT30726329Brassica oleraceaLupinus angustifolius87.0284.9387.66389forward

Expression of CNT30237858

Peptides detected in this lncRNA

>peptide 1 (49 aa)
SASTRDSWCISTDLTSVVNPEGAKVTTIPGLSIPVSTRPTGTVPIPPIL*

>peptide 2 (55 aa)
KCLHKRLVVHLNRLNFSGQPRRSKGHNHTRLEHTGLNTTHWHRSNTTNLVDILKW*

Sequence

>CNT30237858
AAGTGCCTCCACAAGAGACTCGTGGTGCATCTCAACAGACTTAACTTCAGTGGTCAACCCAGAAGGAGCAAAGGTCACAACCATACCAGGCTTGAGCATA
CCGGTCTCAACACGACCCACTGGCACCGTTCCAATACCACCAATCTTGTAGACATCCTGAAGTGGTAGACGGAGGGGCTTGTCTGATGGCCTCTTGGGCT
CGTTGATCTGGTCAAGTGCCTCAAGGAGAGTTGGTCCCTTGTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTTGTCACCCTCGAAACCAGAGATGGG
GACGAATGGGATTTTGTCCGGGTTGTACCCAACCTTCTTCAAGTAGGAAGACACCTCCTTGATAATCTCATCGTACCTAGCCTTGGAGTACTTAGGGGTA
GTAGCATCCATCTGCAACAAGAAAACAAATACACAACACATTCGTTA