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Detailed information on CNT3020493


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41803|EF1A_MAIZE, E-value = 7e-112

BLAST vs NONCODE:
NONMEST004097, E-value = 1e-74

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30618435Citrullus lanatusSesamum indicum19.1160.0887.8295forward
CNT30274113Citrullus lanatusChenopodium quinoa29.673.2488.4457forward
CNT30505987Citrullus lanatusNicotiana attenuata13.9265.3589.77215forward
CNT30224987Citrullus lanatusHordeum vulgare18.5997.2986.41287forward
CNT30311981Citrullus lanatusCamelina sativa25.0698.4786.05387forward
CNT30614218Citrullus lanatusArabis alpina17.6847.1583.88273forward
CNT30600411Citrullus lanatusFraxinus excelsior22.687.0388.54349forward
CNT3015866Citrullus lanatusZea mays25.8455.5787.97399forward
CNT30232362Citrullus lanatusAnanas comosus11.8532.0588.52183forward
CNT30355420Citrullus lanatusLactuca sativa23.6453.0587.67365forward
CNT30151899Citrullus lanatusPrunus persica29.7341.6189.11459forward
CNT30423542Citrullus lanatusPapaver somniferum48.0670.5383.02742forward
CNT30706378Citrullus lanatusPrunus avium36.9850.5386.34571forward
CNT30644842Citrullus lanatusCannabis sativa10.1738.8688.54157forward
CNT3052982Citrullus lanatusAmborella trichopoda38.1545.0382589forward
CNT3037774Citrullus lanatusCucumis melo19.6939.3396.05304forward

Expression of CNT3020493

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MTQNAGSGLVGLFLLDSGFGDLGSCWVLLLHTLDHTNCNGLTHITNSKTTQWWV*

>peptide 2 (37 aa)
MQARGWLAYFFLTADLVTLAPVGSFFSTLLITPTATV*

Sequence

>CNT3020493
AGGATGAAGAGAAATTAAGCTTAAATTAAAAACATTTAACCCTCAGCAGTATCCAACAATTTTAATGTCTCAAAATGACTCAGAAACAACAAAGCAAAAT
TAAGACAAAAAAACACAAAACCAGACAAGTAAACTAAATAATTAAGAACTACTAAGAGCACCAAAAACCAAAAGTCTCATATTTAGCATATTAAAACCAT
TCTTCTCAATGACACAAAATGCAGGCTCGGGGTTGGTTGGCTTATTTCTTCTTGACAGCGGATTTGGTGACCTTGGCTCCTGTTGGGTCCTTCTTCTCCA
CACTCTTGATCACACCAACTGCAACGGTTTGACGCATATCACGAACAGCAAAACGACCCAATGGTGGGTATGAGGAGAATGTCTCCACAACCATTGGCTT
GGTCGGAACCATCTTAACCATACCGGCATCACCGTTCTTCAAGAATTTGGGCTCCTTTTCGAGTTCCTTACCAGATCGACGATCAATCTTGGTGAGGATC
TCAGCAAACTTAACAGCAATGTGGGAGGTGTGGCAACGAAACCACGCTTGAGATCCTTGACAGCAACGTTCTTCACGTTGAAGCCAACATTGTCACCAGG
CAAGGCCTCTGGCAGAGACTCGTGGTGCATTTCAACAGACTTAACTTCAGTGGTGAGTCCAGTTGGTCCAAAGGTGACAACCATACCAGGCTTGAGGATA
CCAGTTTCAACACGTCCAACAGGGACAGTTCCAATACCACCAATCTTGTAAACGTCCTGAAGTGGGAGACGGAGGGGCTTGTCTGAGGGCCTCTTGGGCT
CAGAGATCAAGTCAAGAGCCTCAAGGAGGGTTGGTGGACCTCTCAATCATGTTGTCACCCTCGAAACCAGAGATGGGAACAAAAGGGATTTTTTCTGGGT
TGTATCCGACCTTCTTGAGGTAAGATGAGACTTCCTTCACGATTTCGTCGTACCTTGCCTTGGAGTATTTGGGAGTGGTAGCATCCATCTAGAGAAATCA
CCAATGAAAAGCAACAGCTAATTTGGATTCAATTATGGGAGAAATATGTGTGCAATTTTTTAAAAGATTCTTAGAATCTAAAAAAAAGCCAGAACAGTAA
GCAAATGGAATTTCAGAAAATCATCTACGACAAGGCATGTGAAAATGGACATTAAAAAGAGGCGAAAAATAGACTCAACAATGTTTCAATATTAATCATA
TGAGTAGAGGGGTCCGAACCCCCATCGATTCTGTGAAAAGAATCACACCAGTTATGGGACCGGAGCCAACACCCAAATAGCCACTCTCCTCAGGGAAACA
GATTATTGTCTAATAGAGTGGGCACATATCATAGACAGGACAGTAATAAAATAACGTCCGTAGATGCCAATTAATAGCCACATTGCATCATCACTATGAG
TGTGACCCTCCATCAGTTTTAAGAGAGTACAATCAATTAGGCATGTATTATATGGTGGCGAATTTAAAAATTGATGCTAGAAATTATTAAATGCACATAC
GAGATTAAAACATGTAATATCAGAACGAAGTAGTTAAATATATG