Detailed information on CNT30579541


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41803|EF1A_MAIZE, E-value = 3e-102

BLAST vs NONCODE:
NONBNAT001751, E-value = 2e-95

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639730Echinochloa crusgalliNymphaea colorata41.3225.986.13238forward
CNT30618435Echinochloa crusgalliSesamum indicum43.5851.1289.24251forward
CNT30272277Echinochloa crusgalliChenopodium quinoa38.375087.78221forward
CNT30525464Echinochloa crusgalliPhaseolus vulgaris47.5748.585.4274forward
CNT30194937Echinochloa crusgalliPisum sativum41.3223.8290.76238forward
CNT30146334Echinochloa crusgalliMedicago truncatula38.8922.5491.07224forward
CNT30598015Echinochloa crusgalliFraxinus excelsior85.2497.8188.19491forward
CNT30151899Echinochloa crusgalliPrunus persica37.8519.7689.45218forward
CNT30148140Echinochloa crusgalliBrachypodium distachyon41.3262.6393.7238forward

Expression of CNT30579541

Peptides detected in this lncRNA

>peptide 1 (77 aa)
MMMTWEVKLAASLAGSSLELERLMVHLNRLHLSGQATGSKGDNHTRLDDTSLNTTNRHSSNTTNLVHILKGETQGLV*

>peptide 2 (99 aa)
NHLHHTGITVLQELGLLLELLARSSVDLGNKFGKLDSNVGGVAIQHWGIAIANLTRVVHDDDLGGEAGSLLGRVILGVGAPHGASQQTSPQWSGHWVQR*

>peptide 3 (29 aa)
ESSSPYRHHRSSGTWAPSRAPCQIVCRSW*

>peptide 4 (48 aa)
IIFTIPASPFFRNLGSFSSSLPDRLSILVTSSANLTAMWEVWQSSTGA*

Sequence

>CNT30579541
GAATCATCTTCACCATACCGGCATCACCGTTCTTCAGGAACTTGGGCTCCTTCTCGAGCTCCTTGCCAGATCGTCTGTCGATCTTGGTAACAAGTTCGGC
AAACTTGACAGCAATGTGGGAGGTGTGGCAATCCAGCACTGGGGCATAGCCATTGCCAATCTGACCAGGGTGGTTCATGATGATGACCTGGGAGGTGAAG
CTGGCAGCCTCCTTGGCAGGGTCATCCTTGGAGTTGGAGCGCCTCATGGTGCATCTCAACAGACTTCACCTCAGTGGTCAGGCCACTGGGTCCAAAGGTG
ACAACCATACCAGGCTTGATGACACCAGTCTCAACACGACCAACAGGCACAGTTCCAATACCACCAATCTTGTACACATCCTGAAGGGGGAGACGCAGGG
GCTTGTCTGAAGGCCTCTTCGGCTCATTGATCAAGTCAAGAGCCTCAAGCAGCGTTGGGCCCTTGTACCAGTCCAGGTTGGTGGACCTCTCAATCATGTT
GTCACCCTCAAAACCAGAGATAGGAACAAAGTGAATCTTGTCAGGGTTGTATCCAACCTTCTTGAGGTAGGAAGAG