Detailed information on CNT30232362


BLAST search results

BLAST vs Swiss-Prot:
sp|O49169|EF1A_MANES, E-value = 4e-98

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672978Ananas comosusSetaria viridis44.4832.6985.83254forward
CNT30316746Ananas comosusCorylus avellana48.3455.8785.51276forward
CNT30518292Ananas comosusJuglans regia51.3163.8385.32293forward
CNT30618435Ananas comosusSesamum indicum49.7457.8483.8284forward
CNT3020493Ananas comosusCitrullus lanatus32.0511.8588.52183forward
CNT30503993Ananas comosusNicotiana attenuata39.481.8284225forward
CNT30121467Ananas comosusPhyscomitrium patens40.2834.6984.78230forward
CNT30287202Ananas comosusTriticum aestivum51.4940.8985.03294forward
CNT30224987Ananas comosusHordeum vulgare37.6572.8884.19215forward
CNT30590460Ananas comosusMusa acuminata42.7363.5483.2244forward
CNT30234068Ananas comosusBrassica oleracea50.9661.6582.47291forward
CNT30598511Ananas comosusFraxinus excelsior48.3442.486.59276forward
CNT30368387Ananas comosusSorghum bicolor51.4934.0785.03294forward
CNT30151899Ananas comosusPrunus persica37.6519.4984.65215forward
CNT30706378Ananas comosusPrunus avium51.4926.0285.37294forward
CNT3053016Ananas comosusAmborella trichopoda74.2645.9981.37424forward
CNT3024873Ananas comosusPopulus trichocarpa43.6144.1587.15249forward
CNT3037774Ananas comosusCucumis melo45.8833.8985.88262forward
CNT30100761Ananas comosusOryza rufipogon50.9650.7983.51291forward
CNT30113122Ananas comosusFicus carica46.2331.8185.98264forward

Expression of CNT30232362

Peptides detected in this lncRNA

>peptide 1 (39 aa)
TLNDTDGNCLPHVPDSEPTQRRVLGERLDHHRLRGNHLH*

>peptide 2 (73 aa)
LLMTPTATVCLMSLTANLPKGGYSENVSTTIGFVGIIFTKPASPFFRNFGSFSSSLPDRLSILVKISANFTAM*

Sequence

>CNT30232362
CACTCTTAATGACACCGACGGCAACTGTCTGCCTCATGTCCCTGACAGCGAACCTACCCAAAGGCGGGTACTCGGAGAACGTCTCGACCACCATCGGCTT
CGTGGGAATCATCTTCACTAAACCCGCATCTCCGTTCTTCAGGAACTTCGGCTCCTTCTCAAGCTCCTTGCCAGATCGCCTGTCGATCTTGGTCAAAATC
TCAGCAAACTTCACAGCAATGTGACAGGTGTGGCAATCAAGGACGGGGGCATAGCCATTTGCGATCTGACCGGGCCTACATTGTCTCCAGGAAGGGCCTC
CTGAAGGGCCTCGTGGTGCATTTCAACAGACTTAACTTCAGTTGTGAGACCAGTTGGGGCGAAGGTGACGACCATACCGGGCTTGAGGACCCCAGTCTCG
ACACGGCCCACGGGGACAGTACCGATACCACCAATCTTGTAGACGTCCTGAAGGGGGAGGCGGAGGGGCTTGTCTGAGGGGCGCTTGGGCTCCTGGACCA
GGTCCAGGGCTTCCAAAAGCGTGGGGCCCTTGTACCAGTCGAGGTTGGTGGACCTCTCAATCATGTTGTCA