Detailed information on CNT30677582


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41803|EF1A_MAIZE, E-value = 2e-106

BLAST vs NONCODE:
NONBNAT001751, E-value = 1e-152

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30618435Setaria viridisSesamum indicum53.8770.8887.36348forward
CNT30588666Setaria viridisMusa acuminata47.5263.1784.69307forward
CNT3011290Setaria viridisZea mays97.3745.7591.1629forward
CNT30100761Setaria viridisOryza rufipogon54.3361.2690.6351forward

Expression of CNT30677582

Peptides detected in this lncRNA

>peptide 1 (98 aa)
MVHLNRLHLSGQAAGTKGDKHTRLDDTSLYTTNRHSSNTTNLVHILKGETQGLVRRPLWLIDQVKSLKQCWALVPVQVGGPLNHVVALETRDGNKVNLV

>peptide 2 (41 aa)
TQRMSPQPWAWWEPSSPYQHHRSSGTWAPSRAPCQIVCQSW*

>peptide 3 (51 aa)
LRECLHNHGLGGNHLHHTSITVLQELGLLLELLARSSVNLGNKLGKLDSNV*

>peptide 4 (60 aa)
SENVSTTMGLVGTIFTIPASPFFRNLGSFSSSLPDRLSILVTSSANLTAMCEVWQSSTGA*

Sequence

>CNT30677582
ACTCAGAGAATGTCTCCACAACCATGGGCTTGGTGGGAACCATCTTCACCATACCAGCATCACCGTTCTTCAGGAACTTGGGCTCCTTCTCGAGCTCCTT
GCCAGATCGTCTGTCAATCTTGGTAACAAGCTCGGCAAACTTGACAGCAATGTGTGAGGTGTGGCAGTCCAGCACTGGGGCGTAGCCATTGCCGATCTGG
CCAGGGTGGTTCATGATGATGACCTGGGAGGTGAAGTTGGGTCATCCTTGGAGTTGGAGGCCACGTACCCACGCTTGAGATCCTTCACAGCAACGTTCTT
CACGTTGAAGCCAACATTGTCACCGGGAAGGGCCTCCTGGAGCGCCTCATGGTGCATCTCAACAGACTTCACCTCAGTGGTCAGGCCGCTGGGACCAAAG
GTGACAAGCATACCAGGCTTGATGACACCAGTCTCTACACGACCAACAGGCACAGTTCCAATACCACCAATCTTGTACACATCCTGAAGGGGGAGACGCA
GGGGCTTGTCCGAAGGCCTCTTTGGCTCATTGATCAAGTCAAGAGCCTCAAGCAGTGTTGGGCCCTTGTACCAGTCCAGGTTGGTGGACCTCTCAATCAT
GTTGTCGCCCTCGAAACCAGAGATGGGAACAAAGTGAATCTTGTCA