Detailed information on CNT30368387


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41803|EF1A_MAIZE, E-value = 3e-137

BLAST vs NONCODE:
NONBNAT001751, E-value = 3e-157

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521302Sorghum bicolorSetaria italica67.4439.5191.58582forward
CNT30618435Sorghum bicolorSesamum indicum40.3270.8885.92348forward
CNT30629544Sorghum bicolorVigna unguiculata45.5451.9885.5393forward
CNT30439068Sorghum bicolorAegilops tauschii26.5441.7191.7229forward
CNT30598511Sorghum bicolorFraxinus excelsior51.3368.0584.88443forward
CNT30232362Sorghum bicolorAnanas comosus34.0751.4985.03294forward
CNT30480841Sorghum bicolorArabidopsis halleri4663.9386.65397forward
CNT3052982Sorghum bicolorAmborella trichopoda39.6326.1585.09342forward
CNT3037774Sorghum bicolorCucumis melo52.7258.8687.69455forward
CNT30585575Sorghum bicolorEchinochloa crusgalli44.7375.5492.75386forward

Expression of CNT30368387

Peptides detected in this lncRNA

>peptide 1 (96 aa)
MMMTCEVKLAASLAGSSLELEATYPRFRSFTATFLTLKPTLSPGRASWRASWCISTDLTSVVRPLGPKVTTIPGLMIPVSTRPTGTVPIPPILYTS*

Sequence

>CNT30368387
GGGTAGTAACAAAACTCATAACCACATATGGCCAACACCCGATGTTCGATACAAAAATAACAGAAATTGAGTCTTAATAGTACCCTGGTTTTAACGAAAA
TAACAATACTAAATCGACCAGACAAACATTGCTAGCACAGTTTAGTTGCTCACGTCGATAACAGCAATGACGAAATATTTTAAGTTTCAACTAGGTATCC
CTCGAGAAAACACAGAACCAGCTAGCAGACACCTCATTTCTTCTTAGCGGCAGCCTTGGTCACCTTGGCTCCAGTTGGGTGTGACAGTCCAGCACTGGGG
CGTAGCCGTTGCCAATCTGCCCAGGGTGGTTCATGATGATGACCTGTGAGGTGAAGCTAGCCGCCTCCTTGGCAGGGTCATCCTTGGAGTTGGAGGCCAC
ATACCCACGCTTCAGATCCTTCACAGCAACATTCTTAACATTGAAGCCAACATTGTCACCAGGAAGGGCCTCCTGGAGAGCCTCGTGGTGCATCTCAACA
GACTTAACCTCAGTTGTAAGGCCACTAGGACCGAAGGTGACAACCATACCAGGCTTGATGATACCAGTCTCAACACGTCCCACAGGAACAGTTCCAATAC
CACCAATTTTGTACACATCCTGAAGGGGGAGACGCAGGGGCTTGTCTGAAGGTCTCTTTGGCTCATTGATTAAGTCCAGAGCCTCAAGCAGGGTTGGGCC
CTTGTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTTGTCACCTTCAAAACCAGAGATGGGAACAAAGTGGATCTTGTCTGGGTTGTATCCAACCTTC
TTCAGGTAAGAAGAGACTTCCTTAACAATCTCATCATAACGGGCCTTCGAGTACTTGGGTGTC