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Detailed information on CNT30727585


BLAST search results

BLAST vs Swiss-Prot:
sp|O64937|EF1A_ORYSJ, E-value = 0.0

BLAST vs NONCODE:
NONBNAT007048, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639730Corchorus capsularisNymphaea colorata43.7764.285.42590forward
CNT30377782Corchorus capsularisArabidopsis thaliana51.1168.2286.36689forward
CNT30618435Corchorus capsularisSesamum indicum25.7470.6788.76347forward
CNT30274113Corchorus capsularisChenopodium quinoa34.6474.8487.37467forward
CNT30629544Corchorus capsularisVigna unguiculata29.0851.8586.99392forward
CNT30505987Corchorus capsularisNicotiana attenuata18.5575.9990250forward
CNT30712097Corchorus capsularisGlycine max31.3135.3785.55422forward
CNT30224987Corchorus capsularisHordeum vulgare20.6294.2488.49278forward
CNT30564256Corchorus capsularisActinidia chinensis45.3352.4986.91611forward
CNT30146334Corchorus capsularisMedicago truncatula46.2262.6886.2623forward
CNT30440472Corchorus capsularisAegilops tauschii24.4155.2986.63329forward
CNT30449969Corchorus capsularisSaccharum spontaneum57.261.0986.77771forward
CNT30608730Corchorus capsularisGossypium raimondii33.2374.6789.96448forward
CNT30127375Corchorus capsularisCorymbia citriodora39.0294.2788.78526forward
CNT30624959Corchorus capsularisDaucus carota24.797.9485.89333forward
CNT30480841Corchorus capsularisArabidopsis halleri29.4563.9386.65397forward
CNT30368495Corchorus capsularisSorghum bicolor54.0871.5486.83729forward
CNT30151899Corchorus capsularisPrunus persica25.0730.6488.76338forward
CNT3052982Corchorus capsularisAmborella trichopoda25.3726.1587.43342forward
CNT3024422Corchorus capsularisPopulus trichocarpa50.0788.4785.78675forward
CNT30148140Corchorus capsularisBrachypodium distachyon26.4193.6887.64356forward
CNT30101006Corchorus capsularisOryza rufipogon29.7557.6187.03401forward
CNT30113122Corchorus capsularisFicus carica35.8358.1987.99483forward

Expression of CNT30727585

Peptides detected in this lncRNA

>peptide 1 (34 aa)
LEEELLICFKYAENTTFGIKICLLVNTETFNRNS*

>peptide 2 (54 aa)
MVHLDRLNFSGQSRGTKGDNHTRLKNTSLNTTNRDSSNTTNLVDILKWETEWLV*

>peptide 3 (69 aa)
MLSPSKPEIGTNGILSGRSGLSEGLLGSLIWSRASRSVGPLYQSRLVDLSIMLSPSKPEIGTNGILSGL*

>peptide 4 (86 aa)
MSLTAKRPRGGYSEKVSTTMGLVGIILTIPASPFFKNLGSFSSSFPDRLSIFVKSSANLTAMWEVWQSSTGAYPFPIWPGWFMMIT*

Sequence

>CNT30727585
CTGGAGGAAGAGCTCTTAATATGCTTCAAATATGCAGAAAACACCACATTTGGCATTAAAATATGCTTACTTGTGAACACAGAAACATTTAACAGAAATT
CTTAAATTAAGATTGTTTTAAAAGCATCCAACTACAATTTTAAAGCAGACATTGACAAATTTGTAGAAGTCTCAATCAAAACATAACAGATAGAAAGCAT
ATAAAAGTCATCCACAAAACCGCAATGTAAAATACTCAGAATAAATTAAAGACCAAAATTAAAAGACCAACTATCATCCTAGCTGTAATAGTACTCTCTC
TCAAAAGCAACCTCATTTCTTCTTGGCAGCAGACTTGGTGACCTTAGCACCAGATGGGTCCTTCTTCTCAACACTCTTGATAACACCAACAGCAACAGTC
TGCCTCATGTCCCTAACAGCAAAACGTCCAAGAGGTGGGTACTCAGAGAAAGTCTCCACAACCATGGGCTTAGTGGGAATCATCTTAACCATCCCGGCAT
CACCGTTCTTCAAGAACTTAGGCTCCTTCTCGAGCTCCTTTCCAGATCGTCTGTCAATCTTTGTCAAGAGTTCAGCAAACTTGACAGCAATGTGGGAGGT
GTGGCAATCGAGCACCGGGGCGTATCCATTTCCGATCTGGCCAGGGTGGTTCATGATGATAACCTGAGAGGTGAAGTTGGCAGCTTCCTTGGCAGGATCA
TCCTTAGAGTTAGATGCGACGTAACCACGCTTGAGATCCTTAACAGCAACGTTCTTAACATTGAACCCGACATTGTCACCGGGGAGAGCCTCCTGGAGAG
CTTCATGGTGCATCTCGACAGACTTAACTTCAGTGGTCAGTCCAGAGGGACCAAAGGTGACAACCATACCAGGCTTAAGAACACCAGTCTCAACACGACC
AACAGGGACAGTTCCAATACCACCAATCTTGTAGACATCCTGAAGTGGGAGACGGAGTGGCTTGTCTGAGGGCCTCTTGGGCTCATTGATCTGGTCAAGA
GCCTCAAGGAGTGTTGGACCCTTGTACCAGTCAAGGTTGGTTGACCTCTCAATCATGTTATCACCCTCAAAACCAGAGATTGGGACGAATGGGATTTTGT
CTGGACGGAGTGGCTTGTCTGAGGGCCTCTTGGGCTCATTGATCTGGTCAAGAGCCTCAAGGAGTGTTGGACCCTTGTACCAGTCAAGGTTGGTTGACCT
CTCAATCATGTTATCACCCTCAAAACCAGAGATTGGGACGAATGGGATTTTGTCTGGGTTGTAACCAACCTTCTTCAGGTAAGAAGAGACTTCCTTAACA
ATTTCATCATACCTTGCCTTGGAGTACTTTGGAGTTGTGGCATCCATC