« Back to Oryza rufipogon search


Detailed information on CNT30100761


BLAST search results

BLAST vs Swiss-Prot:
sp|O64937|EF1A_ORYSJ, E-value = 3e-131

BLAST vs NONCODE:
NONBNAT001751, E-value = 8e-95

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677582Oryza rufipogonSetaria viridis61.2654.3390.6351forward
CNT30316757Oryza rufipogonCorylus avellana59.6928.5586.26342forward
CNT30518094Oryza rufipogonJuglans regia58.9936.1188.17338forward
CNT30371709Oryza rufipogonArabidopsis thaliana59.6953.1187.72342forward
CNT30618435Oryza rufipogonSesamum indicum57.4267.0186.32329forward
CNT30272277Oryza rufipogonChenopodium quinoa49.5664.2586.27284forward
CNT3021172Oryza rufipogonCitrullus lanatus61.7867.4384.18354forward
CNT30525464Oryza rufipogonPhaseolus vulgaris58.9959.8285.21338forward
CNT30629544Oryza rufipogonVigna unguiculata58.6444.4485.71336forward
CNT30505987Oryza rufipogonNicotiana attenuata42.5874.1688.93244forward
CNT30588666Oryza rufipogonMusa acuminata84.8210081.28486forward
CNT30234210Oryza rufipogonBrassica oleracea60.2131.3486.96345forward
CNT30665783Oryza rufipogonTriticum dicoccoides59.6937.5491.52342forward
CNT30310177Oryza rufipogonCamelina sativa61.9530.688.17355forward
CNT3059230Oryza rufipogonArabidopsis lyrata61.2629.288.32351forward
CNT3077042Oryza rufipogonBrassica juncea59.5128.3287.98341forward
CNT3011290Oryza rufipogonZea mays102.9742.9186.95590forward
CNT30608730Oryza rufipogonGossypium raimondii42.7640.8384.9245forward
CNT30232362Oryza rufipogonAnanas comosus50.7950.9683.51291forward
CNT30685754Oryza rufipogonTriticum urartu101.0534.989.81579forward
CNT30480841Oryza rufipogonArabidopsis halleri57.4252.9887.23329forward
CNT30355521Oryza rufipogonLactuca sativa61.613784.99353forward
CNT30151899Oryza rufipogonPrunus persica49.5625.7584.15284forward
CNT30424540Oryza rufipogonPapaver somniferum86.0463.8684.38493forward
CNT3052982Oryza rufipogonAmborella trichopoda53.5823.4784.69307forward
CNT30113122Oryza rufipogonFicus carica59.5141.0886.22341forward
CNT3050294Oryza rufipogonCucumis sativus59.5155.6384.75341forward

Expression of CNT30100761

Peptides detected in this lncRNA

>peptide 1 (48 aa)
GLHNHGLGGNHLNHTSITVLEELGLLLQLLAGSSVDLGHQLSKLDGNV*

>peptide 2 (58 aa)
KVSTTMGLVGIILTIPASPFLRNLGSFSSSLPDRLSILVTSSANLTAMCEVWQSSTGA*

>peptide 3 (81 aa)
MMITWEATYPRFRSFTATFFTLNPTLSPGRASWRASWCISTDLTSVVRPLGPKVTTIPGLRTPVSTRPTGTVPIPPILYTS*

Sequence

>CNT30100761
AAGGTCTCCACAACCATGGGCTTGGTGGGAATCATCTTAACCATACCAGCATCACCGTTCTTGAGGAACTTGGGCTCCTTCTCCAGCTCCTTGCCGGATC
GTCTGTCGATCTTGGTCACCAGCTCAGCAAACTTGACGGCAATGTGTGAGGTGTGGCAGTCCAGCACTGGGGCGTAGCCGTTGCCGATCTGCCCAGGGTG
GTTCATGATGATCACCTGGGAGGCCACGTACCCACGCTTCAGATCCTTCACGGCAACGTTCTTCACGTTGAACCCAACGTTGTCACCAGGAAGAGCCTCC
TGGAGAGCCTCGTGGTGCATCTCAACCGACTTGACCTCAGTGGTCAGACCGCTGGGACCAAAGGTCACCACCATACCAGGCTTGAGGACACCAGTCTCAA
CACGACCCACAGGCACGGTACCAATACCGCCGATCTTGTACACGTCCTGAAGGGGAAGACGTAGGGGCTTGTCTGATGGCCTCTTGGGCTCATTGATCTG
GTCAAGAGCCTCAAGCAAGGTGGGGCCCTTGTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTTGTCACCC