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Detailed information on CNT30588666


BLAST search results

BLAST vs Swiss-Prot:
sp|P17786|EF1A_SOLLC, E-value = 6e-107

BLAST vs NONCODE:
NONMEST004097, E-value = 1e-56

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677582Musa acuminataSetaria viridis63.1747.5284.69307forward
CNT30639730Musa acuminataNymphaea colorata57.230.2582.73278forward
CNT30316757Musa acuminataCorylus avellana68.9327.9685.07335forward
CNT30618435Musa acuminataSesamum indicum69.1468.4380.95336forward
CNT3021028Musa acuminataCitrullus lanatus67.726.4982.98329forward
CNT30505987Musa acuminataNicotiana attenuata50.2174.1684.02244forward
CNT30287202Musa acuminataTriticum aestivum63.1742.782.74307forward
CNT30224987Musa acuminataHordeum vulgare55.9792.281.99272forward
CNT30509820Musa acuminataSolanum lycopersicum46.0910083.48224forward
CNT30608730Musa acuminataGossypium raimondii53.743.583.14261forward
CNT30228831Musa acuminataAnanas comosus31.0748.0984.77151forward
CNT30624959Musa acuminataDaucus carota53.0975.8883.33258forward
CNT30685754Musa acuminataTriticum urartu96.528.2783.58469forward
CNT30151899Musa acuminataPrunus persica62.1427.3882.12302forward
CNT30424540Musa acuminataPapaver somniferum99.1862.4480.71482forward
CNT30706378Musa acuminataPrunus avium67.2828.9484.1327forward
CNT3052982Musa acuminataAmborella trichopoda57.221.2582.37278forward
CNT30100761Musa acuminataOryza rufipogon10084.8281.28486forward
CNT3050685Musa acuminataCucumis sativus68.527482.88333forward

Expression of CNT30588666

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MVHLHGFDFCSESCRTKGDNHTRFQYSSFNTTNRNSSNASNLVNILKRKAKRLVRWTLGLINQVKGFKECRALVPVKVG

Sequence

>CNT30588666
TTGGGCTCCTTCTCCAGCTCCTTGCCAGATCGCCTATCAATCTTGGTTAACAACTCAGCGAATTTGACTGCAATGTGAGAGGTGTGGCAATCCAAGACAG
GAGCATAACCATTCCCAATTTGGCCAGGGTGGTTCATGATGATAACTTGAGAGTTTGAGGCAACAAAACCACGTTTCAAATCCTTCACAGCAACATTCTT
TACGTTGAAGCCAACATTGTCACCAGGTAAAGCCTCCTGGAGTGCCTCATGGTGCATCTCCACGGATTTGACTTCTGTAGTGAGTCCTGTAGGACCAAAG
GTGACAACCATACCAGGTTTCAGTACTCCAGTTTCAACACGACCAACAGGAACAGTTCCAATGCCTCCAATCTTGTAAACATCCTGAAGAGGAAGGCGAA
GAGGCTTGTCCGTTGGACGCTTGGGCTCATTAATCAAGTCAAGGGCTTCAAGGAGTGTCGGGCCCTTGTACCAGTCAAGGTTGGTG