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Detailed information on CNT30449234


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41803|EF1A_MAIZE, E-value = 0.0

BLAST vs NONCODE:
NONBNAT001751, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30618435Saccharum spontaneumSesamum indicum29.0270.8886.78348forward
CNT30287202Saccharum spontaneumTriticum aestivum39.766.289.29476forward
CNT30598511Saccharum spontaneumFraxinus excelsior39.773.1284.66476forward
CNT30101006Saccharum spontaneumOryza rufipogon33.3657.4792.5400forward
CNT30580076Saccharum spontaneumEchinochloa crusgalli33.1930.0894.22398forward
CNT30116111Saccharum spontaneumOryza nivara27.9438.2990.45335forward

Expression of CNT30449234

Peptides detected in this lncRNA

>peptide 1 (98 aa)
MMMTWEVKLAASLAGSSLELELEATYPRFRSFTATFLTLKPTLSPGRASWRASWCISTDLTSVVRPLGPKVTTIPGLMTPVSTRPTGTVPIPPILYTS*

>peptide 2 (81 aa)
MTPTATVCLMSRTAKRPRGGYSEKVSTTMGLVGTIFTIPASPFLRNLGSFSSSLPDRLSILVTSSANLTAMCEVWQSSTGA*

>peptide 3 (54 aa)
MVHLNRLNLSSKATGTEGNHHTGLDDTSLNTPNRNSSNTTNLVHILKGETQGLV*

>peptide 4 (50 aa)
CNRNLNTARQVRYGRANHQLFNNSKIGKQAITATRVVTKLITMAHTLCSI*

>peptide 5 (45 aa)
MFDIKITEMSLNSTLVLTKIKVLNRPDRHCQHSLVAHAITAITSH*

Sequence

>CNT30449234
GTGCAACAGAAATTTAAACACTGCTAGACAGGTAAGGTATGGACGAGCGAATCATCAGCTATTTAATAACAGCAAAATAGGTAAACAGGCGATCACTGCA
ACAAGGGTAGTAACAAAACTCATAACCATGGCTCATACCCTATGTTCGATATAAAAATAACAGAAATGAGTCTTAATAGCACCCTGGTTTTAACGAAAAT
AAAAGTTCTAAATCGACCAGACAGACATTGCCAACACAGTTTAGTTGCTCACGCAATAACAGCAATAACCTCCCACTAGGTATCCCCAAGCAAACACAGA
ACCAGCCAGACACCTCATTTCTTCTTGGCGGCAGCCTTGGTCACCTTGGCTCCAGTTGGGTCCTTCTTCTCCACACTCTTGATGACTCCAACAGCCACCG
TTTGCCTCATGTCCCGCACAGCAAAGCGACCAAGAGGAGGATATTCAGAGAAGGTCTCCACCACCATGGGCTTAGTGGGAACCATCTTCACCATACCAGC
ATCACCGTTCTTAAGGAATTTGGGCTCCTTCTCAAGCTCCTTGCCAGACCGCCTATCAATCTTGGTAACGAGCTCAGCAAACTTGACAGCAATGTGTGAG
GTGTGGCAGTCCAGCACTGGCGCGTAGCCGTTGCCGATCTGCCCAGGGTGGTTCATGATGATGACCTGGGAGGTGAAGCTAGCAGCCTCCTTGGCAGGGT
CATCCTTGGAGTTGGAGTTGGAGGCCACATACCCACGCTTCAGATCCTTCACAGCAACATTCTTAACGTTGAAGCCAACGTTGTCACCAGGAAGAGCCTC
CTGGAGAGCCTCATGGTGCATCTCAACAGACTTAACCTCAGTAGTAAGGCCACTGGGACCGAAGGTAACCACCATACCGGGCTTGATGACACCAGTCTCA
ACACGCCCAACAGGAACAGTTCCAATACCACCAATCTTGTACACATCCTGAAGGGGGAGACGCAGGGGCTTGTCTGAAGGCCTCTTTGGCTCATTGATCA
AGTCCAGAGCCTCAAGCAGGGTGGGGCCCTTGTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTTGTCACCTTCGAAACCAGAGATGGGAACAAAGTG
GATCTTGTCAGGGTTGTATCCAACCTTCTTCAGGTAGGAAGAGACTTCCTTCACAATCTCATCATAACGGGCCTTCGAGTACTTGGGTGTGGTGGCATC