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Detailed information on CNT3052982


BLAST search results

BLAST vs Swiss-Prot:
sp|O64937|EF1A_ORYSJ, E-value = 4e-99

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672753Amborella trichopodaSetaria viridis43.6564.7484.59571forward
CNT30521302Amborella trichopodaSetaria italica26.1523.2285.96342forward
CNT30639730Amborella trichopodaNymphaea colorata22.5532.186.44295forward
CNT30535563Amborella trichopodaEucalyptus grandis25.3140.5685.8331forward
CNT30316757Amborella trichopodaCorylus avellana26.1528.5586.55342forward
CNT30546799Amborella trichopodaIpomoea triloba26.1527.8586.84342forward
CNT30518094Amborella trichopodaJuglans regia26.1536.5485.38342forward
CNT30371709Amborella trichopodaArabidopsis thaliana22.5545.8185.42295forward
CNT30618435Amborella trichopodaSesamum indicum24.7765.9986.11324forward
CNT30272277Amborella trichopodaChenopodium quinoa23.9370.8185.62313forward
CNT3020493Amborella trichopodaCitrullus lanatus45.0338.1582589forward
CNT30727585Amborella trichopodaCorchorus capsularis26.1525.3787.43342forward
CNT30525464Amborella trichopodaPhaseolus vulgaris26.1560.5386.84342forward
CNT30629544Amborella trichopodaVigna unguiculata25.9944.9786.76340forward
CNT30505987Amborella trichopodaNicotiana attenuata25.1510083.59329forward
CNT30712080Amborella trichopodaGlycine max19.9536.0583.91261forward
CNT30160120Amborella trichopodaPistacia vera22.5523.7389.15295forward
CNT30637620Amborella trichopodaCapsicum annuum21.6414.7483.39283forward
CNT30287202Amborella trichopodaTriticum aestivum23.4742.783.06307forward
CNT30224987Amborella trichopodaHordeum vulgare21.1893.984.48277forward
CNT30564008Amborella trichopodaActinidia chinensis41.5171.3581.4543forward
CNT30588666Amborella trichopodaMusa acuminata21.2557.282.37278forward
CNT3084119Amborella trichopodaVigna radiata25.9919.185340forward
CNT30541587Amborella trichopodaBrassica napus21.9424.486.41287forward
CNT30509820Amborella trichopodaSolanum lycopersicum16.8298.2185220forward
CNT30146188Amborella trichopodaMedicago truncatula21.5635.9284.04282forward
CNT30611975Amborella trichopodaArabis alpina34.0233.3383.37445forward
CNT30598511Amborella trichopodaFraxinus excelsior23.6247.4787.06309forward
CNT30449969Amborella trichopodaSaccharum spontaneum26.1527.185.09342forward
CNT3015866Amborella trichopodaZea mays22.5541.0987.8295forward
CNT30608730Amborella trichopodaGossypium raimondii21.0245.8387.64275forward
CNT30651330Amborella trichopodaRosa chinensis11.1633.1193.84146forward
CNT30127375Amborella trichopodaCorymbia citriodora22.5552.8787.8295forward
CNT30624959Amborella trichopodaDaucus carota22.5586.7685.42295forward
CNT30685098Amborella trichopodaTriticum urartu26.1523.2784.5342forward
CNT30350898Amborella trichopodaEragrostis tef25.9930.5286.47340forward
CNT30480841Amborella trichopodaArabidopsis halleri22.447.1884.98293forward
CNT30368387Amborella trichopodaSorghum bicolor26.1539.6385.09342forward
CNT30151899Amborella trichopodaPrunus persica23.3227.6586.89305forward
CNT30426787Amborella trichopodaPapaver somniferum33.9440.2984.01444forward
CNT30706378Amborella trichopodaPrunus avium47.6355.1382.18623forward
CNT3024315Amborella trichopodaPopulus trichocarpa22.0237.7585.07288forward
CNT3037774Amborella trichopodaCucumis melo26.1544.2485.96342forward
CNT30100761Amborella trichopodaOryza rufipogon23.4753.5884.69307forward
CNT30116376Amborella trichopodaOryza nivara17.241.4486.22225forward
CNT30594443Amborella trichopodaEragrostis curvula26.1529.4686.55342forward
CNT30176122Amborella trichopodaVigna angularis25.9930.0485340forward
CNT30113122Amborella trichopodaFicus carica22.6335.6686.49296forward
CNT30724009Amborella trichopodaLupinus angustifolius45.2654.5180.91592forward
CNT3050685Amborella trichopodaCucumis sativus22.5565.5687.46295forward

Expression of CNT3052982

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MVHLNRLNFSGEPRRGKCDNHTRLKDTSLHSAHRDSPNTSNLVDILKWET*

>peptide 2 (31 aa)
MTDKPPKNFKFSQKSQEMRRQQVEILDPSQT*

>peptide 3 (76 aa)
MSLTANLPRGGYSEKVSTTMGFVGIILTNPASPFFKNLGSFSSSFPDRLSIFVRISANLTAMWQGHPWSWRRQNHA*

>peptide 4 (58 aa)
MASWAPRSCQELRARWDPCTSNHVLDKVTMTRGINDSAVILSRLKFPQSNVNCDTTLT*

>peptide 5 (29 aa)
MQKKKHTIESRSRKQYHRQKDPRPRFTSS*

Sequence

>CNT3052982
ATCTAACAGAACTCATACCAGAGAGTCATAAAGGCACACATATATCTATCGACTTTCATTGAAATAAATTGATTTCATCACCTAATCAATCTTTTGGGGC
AATCAAATGACCGACAAACCACCAAAAAACTTTAAATTTAGCCAAAAATCACAAGAGATGCGTAGGCAACAGGTGGAAATTCTGGACCCAAGTCAAACTT
AACTCATCACTTCAAATCACCATAATCACAATCTATTCTTCAAATAAACAACTAACAAAATAGACTCGTACATATTCCATGTCCCGGACAAAAAGATAAA
TAGAGTGCAAAATGTCTTCTTTTTGTTTTTACTATAGCGAAAAAGAAGGGGGAAGAAGAAAACCTCCCTAATCAGCACGCCACCGCCTGTCTAGCACCCA
GTTCTGCATTGTCCGCCCGCCAAATAACAGCAACAAACCAAAACACAGAACAAAATAACGAAAACATAAAGGAAATGCAAAAGAAGAAACACACGATAGA
GTCCAGAAGCAGAAAACAGTATCACCGACAAAAGGACCCAAGACCTCGGTTCACTTCTTCTTAGCAGCTGACTTGGTCACCTTGGCACCACTTGGGTCCT
TCTTCTCAACAGCCTTGATCACACCAACAGCCACGGTTTGCCTCATGTCCCTGACAGCAAACCTACCAAGAGGTGGGTACTCAGAGAAGGTCTCAACAAC
CATGGGCTTCGTGGGGATCATCTTAACGAATCCAGCATCACCATTCTTCAAGAATTTGGGCTCCTTCTCAAGCTCTTTTCCTGACCGCCTATCAATCTTT
GTGAGGATCTCAGCAAACTTGACGGCAATGTGGCAGGGTCATCCTTGGAGTTGGAGGCGACAAAACCACGCTTGAGATCCTTGACAGCAACATTCTTCAC
ATTGAACCCCACATTGTCACCAGGGAGAGCCTCTTGAAGAGCCTCATGGTGCATCTCAACAGACTTAACTTCAGTGGTGAGCCCAGAAGGGGCAAATGTG
ACAACCATACCAGGCTTAAGGACACCAGTCTCCACTCGGCCCACAGGGACAGTCCCAATACCTCCAATCTTGTAGACATCCTGAAGTGGGAGACGTAGGG
GCTTGTCAGATGGCCTCTTGGGCTCCGAGATCATGTCAAGAGCTTCGAGCAAGGTGGGACCCTTGTACCAGTAATCATGTTCTTGATAAAGTCACGATGA
CCCGGGGCATCAATGACAGTGCAGTAATACTTAGTCGTCTCAAATTTCCACAGAGCAATGTCAATTGTGATACCACGCTCACGTGACCAGTGGTTGTTGA
TTTGCCAG