« Back to Nicotiana attenuata search


Detailed information on CNT30505987


BLAST search results

BLAST vs Swiss-Prot:
sp|P17786|EF1A_SOLLC, E-value = 5e-52

BLAST vs NONCODE:
NONMEST004097, E-value = 1e-73

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316746Nicotiana attenuataCorylus avellana74.1649.3986.89244forward
CNT30518292Nicotiana attenuataJuglans regia74.1653.1688.52244forward
CNT30618435Nicotiana attenuataSesamum indicum69.9146.8486.52230forward
CNT30272277Nicotiana attenuataChenopodium quinoa68.0950.6885.71224forward
CNT3020493Nicotiana attenuataCitrullus lanatus65.3513.9289.77215forward
CNT30727585Nicotiana attenuataCorchorus capsularis75.9918.5590250forward
CNT3093993Nicotiana attenuataSolanum tuberosum25.8416.2895.2985forward
CNT30287202Nicotiana attenuataTriticum aestivum74.1633.9485.66244forward
CNT30224987Nicotiana attenuataHordeum vulgare65.3572.8889.77215forward
CNT30588666Nicotiana attenuataMusa acuminata74.1650.2184.02244forward
CNT30237858Nicotiana attenuataBrassica oleracea69.651.2387.34229forward
CNT30509820Nicotiana attenuataSolanum lycopersicum46.568.392.81153forward
CNT30665783Nicotiana attenuataTriticum dicoccoides74.1626.7889.75244forward
CNT30598015Nicotiana attenuataFraxinus excelsior71.7347.0188.98236forward
CNT3015474Nicotiana attenuataZea mays72.3441.3986.97238forward
CNT30608730Nicotiana attenuataGossypium raimondii45.2924.8389.93149forward
CNT30203418Nicotiana attenuataHelianthus annuus52.2842.0584.88172forward
CNT30624959Nicotiana attenuataDaucus carota66.2664.1283.94218forward
CNT30685098Nicotiana attenuataTriticum urartu69.615.5890.83229forward
CNT30480841Nicotiana attenuataArabidopsis halleri76.640.5885.32252forward
CNT30151899Nicotiana attenuataPrunus persica72.3421.5884.87238forward
CNT30706378Nicotiana attenuataPrunus avium74.1621.5988.11244forward
CNT3052982Nicotiana attenuataAmborella trichopoda10025.1583.59329forward
CNT3024315Nicotiana attenuataPopulus trichocarpa59.8825.8287.82197forward
CNT3037774Nicotiana attenuataCucumis melo69.629.6289.08229forward
CNT30147611Nicotiana attenuataBrachypodium distachyon36.7820.1789.26121forward
CNT30100761Nicotiana attenuataOryza rufipogon74.1642.5888.93244forward
CNT30585575Nicotiana attenuataEchinochloa crusgalli68.6944.2387.61226forward
CNT30113122Nicotiana attenuataFicus carica74.1629.485.25244forward
CNT30726405Nicotiana attenuataLupinus angustifolius71.7343.9587.29236forward
CNT3050685Nicotiana attenuataCucumis sativus76.65684.13252forward

Expression of CNT30505987

Peptides detected in this lncRNA

>peptide 1 (58 aa)
RECLLESFVVHLYRLDFSCQTSRPKGHKHTRLEDTSFNTTNRDGSNTTNLVNVLKWKT*

>peptide 2 (50 aa)
GSASWRASWCISTDLTSVVRPVGPKVTSIPGLRTPVSTRPTGTVPIPPIL*

Sequence

>CNT30505987
CAGGGAGTGCCTCCTGGAGAGCTTCGTGGTGCATCTCTACAGACTTGACTTCAGTTGTCAGACCAGTAGGCCCAAAGGTCACAAGCATACCAGGCTTGAG
GACACCAGTTTCAACACGACCAACAGGGACGGTTCCAATACCACCAATCTTGTAAACGTCCTGAAGTGGAAGACGTAGGGGTTTGTCTGTGGGCCTCTTG
GGCTCATTAATCTGGTCAAGAGCCTCAAGGAGGGTTGGCCCCTTGTACCAGTGATCATGTTCTTGATAAAGTCCCTGTGTCCGGGGGCATCAATCACAGT
GCAGTAGTACTTAGTGGTCTCAAACTTCC