CANTATAdb - search

Detailed information on CNT30521187

BLAST search results

BLAST vs Swiss-Prot:
sp|O64937|EF1A_ORYSJ, E-value = 0.0

BLAST vs NONCODE:
NONBNAT001751, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30518094	Setaria italica	Juglans regia	64.39	89.64	86.05	839	forward
CNT30618435	Setaria italica	Sesamum indicum	26.71	70.88	87.07	348	forward
CNT3021028	Setaria italica	Citrullus lanatus	63.24	66.34	83.86	824	forward
CNT30525464	Setaria italica	Phaseolus vulgaris	44.74	103.19	82.5	583	forward
CNT30712097	Setaria italica	Glycine max	32.69	35.71	85.68	426	forward
CNT30440472	Setaria italica	Aegilops tauschii	25.4	55.63	93.05	331	forward
CNT30665783	Setaria italica	Triticum dicoccoides	64.24	91.88	87.57	837	forward
CNT30368495	Setaria italica	Sorghum bicolor	56.41	72.13	92.52	735	forward
CNT30427456	Setaria italica	Papaver somniferum	80.74	74.93	84.32	1052	forward
CNT3024428	Setaria italica	Populus trichocarpa	48.73	83.22	85.83	635	forward
CNT3050294	Setaria italica	Cucumis sativus	37.22	79.12	84.95	485	forward

Expression of CNT30521187

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MTPTATVCLMSRTAKRPRGGYSEKVSTTMGLVGIIFTIPASPFFRNLGSFSSSLPDRLSILVMSSANLTAMWEVWQSSTGA*

>peptide 2 (96 aa)
MMMTWEVKLAASLAGSSLELEATNPRLRSFTATFFTLNPTLSPGRASWRASWCISTDFTSVVRPVGPKVTSIPGLMIPVSTRPTGTVPIPPILYTS*

Sequence

>CNT30521187
TAAGTTTTGCCAAATCCAAATATAAAAACTGTATGTAAACATCAAACAGACCGAGGACACATTGCCAGCTGAGATTAATAGTTCACGAGATAACAGCAAT
GGCCATAGACAAAACTTAAGTGATATTATAGCATCTAGGCATGCCAAAAGCAGAAGTGGAATCAACCACCAGACACATCATTTCTTCTTGGCTGCAGCCT
TAGTCACCTTGGCGCCCGTTGGGTCCTTCTTCTCCACGCTCTTGATGACTCCAACAGCAACCGTTTGCCTCATGTCACGGACAGCAAAACGACCAAGAGG
AGGGTACTCAGAGAAGGTCTCCACCACCATGGGCTTGGTGGGAATCATCTTCACCATACCAGCATCACCATTCTTCAGGAACTTGGGCTCCTTCTCAAGC
TCCTTACCGGATCGTCTGTCGATCTTGGTAATGAGCTCAGCAAACTTGACAGCAATGTGGGAGGTGTGGCAGTCCAGCACTGGGGCGTAGCCATTGCCGA
TCTGCCCAGGGTGGTTCATGATGATGACCTGGGAGGTGAAGCTGGCAGCCTCCTTGGCAGGGTCATCCTTGGAGTTGGAGGCCACAAACCCACGCTTGAG
ATCCTTCACAGCAACGTTCTTCACGTTGAACCCAACGTTGTCACCAGGAAGGGCCTCCTGGAGAGCCTCGTGGTGCATCTCAACTGACTTCACCTCAGTA
GTCAGGCCAGTGGGACCAAAGGTGACAAGCATACCAGGCTTGATGATACCGGTCTCAACACGGCCAACAGGGACGGTTCCAATACCACCAATCTTGTACA
CATCCTGAAGGGGAAGACGGAGGGGCTTGTCCGAAGGCCTCTTGGGCTCGTTGATCTGGTCAAGAGCCTCAAGCAGGGTTGGGCCCTTGTACCAGTCAAG
GTTGGTGGACCTCTCAATCATGTTGTCACCCTCAAAACCAGAGATTGGGACGAAGGCAATCTTGTCAGGGTTGTAACCCACCTTCTTCAGGTAGGAGGAG
ACTTCCTTAACAATCTCATCATAGCGGGCCTTGGAGGGCTTGTCCGAAGGCCTCTTGGGCTCGTTGATCTGGTCAAGAGCCTCAAGCAGGGTTGGGCCCT
TGTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTTGTCACCCTCAAAACCAGAGATTGGGACGAAGGCAATCTTGTCAGGGTTGTAACCCACCTTCTT
CAGGTAGGAGGAGACTTCCTTCACAATCTCATCATAACGGGCCTTGGAGTACTTGGGAGTGGTGGCATCCATCTACAAACAGAATAGAAACATAAGATCA
TCA