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Detailed information on CNT30700805


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000067, E-value = 7e-23

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675703Quercus lobataSetaria viridis67.9973.3181.07206forward
CNT30523536Quercus lobataSetaria italica81.8543.8981.85248forward
CNT30640872Quercus lobataNymphaea colorata77.8931.1880.93236forward
CNT30535924Quercus lobataEucalyptus grandis93.7396.9387.68284forward
CNT30316024Quercus lobataCorylus avellana98.6837.1483.61299forward
CNT30516792Quercus lobataJuglans regia79.8727.1989.26242forward
CNT30376525Quercus lobataArabidopsis thaliana75.9130.0784.35230forward
CNT30269286Quercus lobataChenopodium quinoa10046.1280.86303forward
CNT3021339Quercus lobataCitrullus lanatus81.1938.882.93246forward
CNT30727660Quercus lobataCorchorus capsularis97.6954.1183.11296forward
CNT30378927Quercus lobataManihot esculenta6732.7987.19203forward
CNT30403662Quercus lobataBeta vulgaris98.3562.0881.21298forward
CNT30524942Quercus lobataPhaseolus vulgaris94.7242.7781.18287forward
CNT30628784Quercus lobataVigna unguiculata94.7237.7181.53287forward
CNT30710529Quercus lobataGlycine max95.7151.4281.38290forward
CNT3042412Quercus lobataPrunus dulcis99.0140.4987.33300forward
CNT30559586Quercus lobataActinidia chinensis66.0124.7882200forward
CNT30591858Quercus lobataMusa acuminata80.8648.3281.63245forward
CNT30235097Quercus lobataBrassica oleracea87.7933.2181.2266forward
CNT30171519Quercus lobataTrifolium pratense73.9365.8883.04224forward
CNT30145737Quercus lobataMedicago truncatula87.4643.0280.75265forward
CNT30312227Quercus lobataCamelina sativa91.7565.8884.17278forward
CNT30263629Quercus lobataBrassica rapa69.973780.66212forward
CNT30607691Quercus lobataGossypium raimondii93.7341.9585.21284forward
CNT3067990Quercus lobataLeersia perrieri59.7447.5181.77181forward
CNT30648253Quercus lobataRosa chinensis88.1240.0383.9267forward
CNT30713436Quercus lobataMalus domestica golden93.7388.280.99284forward
CNT30625547Quercus lobataDaucus carota72.9421.2980.54221forward
CNT30341749Quercus lobataEragrostis tef70.347.8783.1213forward
CNT30154712Quercus lobataPrunus persica99.0138.5187.67300forward
CNT30410142Quercus lobataPapaver somniferum81.1937.3980.49246forward
CNT30705868Quercus lobataPrunus avium99.0128.2584.67300forward
CNT30642028Quercus lobataCannabis sativa90.7653.7184.73275forward
CNT3027877Quercus lobataTheobroma cacao95.7173.4284.83290forward
CNT3051605Quercus lobataAmborella trichopoda55.1225.1983.23167forward
CNT3023318Quercus lobataPopulus trichocarpa95.054584.72288forward
CNT30121049Quercus lobataCitrus clementina1002885.81303forward
CNT3035221Quercus lobataCucumis melo68.9854.7183.73209forward
CNT30330871Quercus lobataDioscorea rotundata84.8235.5583.27257forward
CNT30150463Quercus lobataBrachypodium distachyon58.7520.2583.15178forward
CNT30584421Quercus lobataEchinochloa crusgalli85.8132.2682.69260forward
CNT30114394Quercus lobataFicus carica98.6850.2580.94299forward
CNT30335476Quercus lobataCynara cardunculus93.0723.2180.85282forward

Expression of CNT30700805

Peptides detected in this lncRNA

>peptide 1 (29 aa)
FGDVGLYGLDGDNLGLLGEYASDGLYFAD*

>peptide 2 (30 aa)
MDWTVTILDCLVSMPVMGCILLTEDCNLEM*

Sequence

>CNT30700805
ATTTGGAGATGTAGGACTATATGGACTGGACGGTGACAATCTTGGACTGCTTGGTGAGTATGCCAGTGATGGGCTGTATTTTGCTGACTGAGGATTGTAA
CTTGGAGATGTAGGGCTATAGCTTGGCGAGGTTGGGCTGTAACTTGGTGATGTTGGGCTATAGCCAGGAGAAGTGGGGCTATAGGCTGGTGAGGTAGGGC
TGTACGATGGGGATGTGGGGCTGTAGGATGGTGACGTAGGGCTGTACGCAGGTGAAGTGGGACTGTATGCAGGCGATGTGGGGCTGTATGCTGGTGATGT
GGG