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Detailed information on CNT30584421


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT000794, E-value = 1e-38

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523577Echinochloa crusgalliSetaria italica62.7881.7488.74506forward
CNT30640872Echinochloa crusgalliNymphaea colorata32.8835.0181.51265forward
CNT30316008Echinochloa crusgalliCorylus avellana29.2836.0983.9236forward
CNT30549101Echinochloa crusgalliIpomoea triloba21.4629.3283.82173forward
CNT30700805Echinochloa crusgalliQuercus lobata15.8842.2482.81128forward
CNT30500604Echinochloa crusgalliCoffea canephora28.5437.481.3230forward
CNT3021339Echinochloa crusgalliCitrullus lanatus27.0534.3881.19218forward
CNT30403407Echinochloa crusgalliBeta vulgaris18.4936.8882.55149forward
CNT30193210Echinochloa crusgalliSecale cereale16.6362.6287.31134forward
CNT30591924Echinochloa crusgalliMusa acuminata27.0540.982.11218forward
CNT30554779Echinochloa crusgalliOryza glaberrima68.9859.4781.47556forward
CNT30668234Echinochloa crusgalliTriticum dicoccoides15.5121.2690.4125forward
CNT30468674Echinochloa crusgalliSaccharum spontaneum69.4861.0790.89560forward
CNT30350933Echinochloa crusgalliEragrostis tef44.9146.2383.43362forward
CNT30366537Echinochloa crusgalliSorghum bicolor71.3465.9489.39575forward
CNT30596736Echinochloa crusgalliOryza meridionalis63.7768.0880.35514forward
CNT30370935Echinochloa crusgalliOryza glumipatula69.1157.5480.79557forward
CNT3028162Echinochloa crusgalliTheobroma cacao27.0538.8682.57218forward
CNT30103173Echinochloa crusgalliOryza rufipogon69.1157.3681.33557forward
CNT30577348Echinochloa crusgalliOryza barthii14.2744.7588.7115forward
CNT30497905Echinochloa crusgalliDigitaria exilis70.9763.3490.21572forward
CNT30558075Echinochloa crusgalliPanicum hallii64.0265.492.44516forward

Expression of CNT30584421

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MKVKLGCMKAMLGYKMVMLGYKMAMWGCMQEM*

>peptide 2 (34 aa)
MMDCIPLKMESSHLVMEMVRMPCAQHMVRTKHLY*

>peptide 3 (35 aa)
CSLEKSDCMESSLGCLESMHVKDCIWLMKDYSSEK*

Sequence

>CNT30584421
CTGTAGTTTGGAGAAGTCTGACTGTATGGAGTCATCCTTGGGCTGCTTGGAGAGTATGCATGTGAAGGACTGTATTTGGCTGATGAAGGATTATAGCTCG
GAGAAGTAGGACTGTAGCTCGGTGATGTCGGGCTGTAACTTGGTGATGTTGGGCTGTATCCAGGCGAGGTAGGGCTGTATGCAGGGGAGGTAGGGCTGTA
TGAGGGGGATGTAGGGCTGTATGAGGGGGATGTAGGGCTGTATGAAGGTGAAGTTGGGCTGTATGAAGGCGATGTTGGGCTATAAGATGGTGATGTTGGG
CTATAAGATGGCGATGTGGGGCTGTATGCAGGAGATGTAGGGCTATATGCTGGCGAGGTTGGACTATAAACTGGCGAGGTGGGGCTGTAGCTTGGTGACG
TAGGACTGTAGCTCGGAGATGTAGGGCTGTAGCTAGGAGATGTAGGGCTGTAACTCGGAGATGTGGGCGAGTATGATGGACTGGTGGGGGAGTATGTTGG
ACTTGTTGGCGAGTAATTCGGGCTTGTAGGACTGTAAGTGGGAGAGCCAGGTGTATATGATGGTGAGGTGGGGCTATAGCTTGGTGATGCAGGGCTGTAT
GATGGAGAAAGAGGGCTATATCCTTTCTCTGGGGTGAAAACTGGAGATGATGGACTGTATCCCCCTGAAGATGGAGAGTAGCCACCTGGTGATGGAAATG
GTGAGAATGCCATGTGCCCAACATATGGTGAGAACGAAGCATCTGTATTAATGGGGGAAGCCCTGATGTTTGGACTCAGCAGGTAACTTGGTGACATCAT
TCCTTC