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Detailed information on CNT30607691


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSTUT001430, E-value = 3e-82

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316024Gossypium raimondiiCorylus avellana61.1551.4381.88414forward
CNT30700805Gossypium raimondiiQuercus lobata41.9593.7385.21284forward
CNT30403782Gossypium raimondiiBeta vulgaris49.9380.8681.66338forward
CNT30195835Gossypium raimondiiPisum sativum23.3462.284.18158forward
CNT30489068Gossypium raimondiiOlea europaea68.3993.7279.05463forward
CNT30710467Gossypium raimondiiGlycine max97.4991.2981.06660forward
CNT3091701Gossypium raimondiiSolanum tuberosum81.6872.7681.37553forward
CNT30648676Gossypium raimondiiRosa chinensis71.264.780.71482forward
CNT30625277Gossypium raimondiiDaucus carota70.7578.0177.87479forward
CNT30355182Gossypium raimondiiLactuca sativa37.5236.2981.1254forward
CNT30642027Gossypium raimondiiCannabis sativa48.651.5782.98329forward
CNT3028162Gossypium raimondiiTheobroma cacao82.1399.1186.87556forward
CNT3035160Gossypium raimondiiCucumis melo58.3578.3781.77395forward
CNT30330871Gossypium raimondiiDioscorea rotundata46.8243.8582.97317forward
CNT30335477Gossypium raimondiiCynara cardunculus39.297082.33266forward

Expression of CNT30607691

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MWDCNLVRLDCTQEKWGYKREMWGCTKEMWGCMMEMWGCTMEKWGYMQEKWGYMQEKWGYIRVKWGCS*

>peptide 2 (34 aa)
MLDCKDWKETTLDYLVSMPETDCTWLTAGCNLER*

Sequence

>CNT30607691
CTGTAATTAGGTGATGTTGGACTGTAAGGACTGGAAGGAGACAACCTTGGACTACTTGGTGAGTATGCCAGAGACGGACTGTACTTGGCTGACTGCGGGT
TGTAACTTGGAGAGGTAGGGCTATAGCTTGGTGATGTGGGACTGTAACTTGGTGAGGTTGGACTGTACCCAGGAGAAGTGGGGCTATAAGCGGGAGATGT
GGGGCTGTACGAAGGAGATGTGGGGCTGTATGATGGAGATGTGGGGCTGTACGATGGAGAAGTGGGGCTATATGCAGGAGAAGTGGGGCTATATGCAGGA
GAAGTGGGGCTATATACGGGTGAAGTGGGGCTGTAGCTAGGTGAAGTGGGACTGTAACTGGGGGATGTGGGACTGTAACTTGGAGATGTAGGGCTATAGC
TTGGTGAGGTTGGAGAATATGAGGGGCTGGTAGGAGAGTAGGCTGGACTTGTCGGACTGTATCCTGGTGAGCTAGGACTGTAAGTAGGTGATGTGGGGCT
GTAACCAGGAGAGGTGGGACTGTACCCAGGAGATGTAGGACTGTAACCAGGAGAGGTAGGACTGTAACCAGGTGATGACGGACTGTATCCAGGAGATGAT
GGGCTGTAACCGGGGGATGACGTAGGAGAGAATGCCATTCCACCAACATAAGGCGAGAACTGTGCATCTGAAATGGG