CANTATAdb - search

Detailed information on CNT3042412

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSTUT001430, E-value = 6e-19

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30523536	Prunus dulcis	Setaria italica	54.52	71.5	80.2	404	forward
CNT30536042	Prunus dulcis	Eucalyptus grandis	72.74	98	83.12	539	forward
CNT30700805	Prunus dulcis	Quercus lobata	40.49	99.01	87.33	300	forward
CNT30376379	Prunus dulcis	Arabidopsis thaliana	78.81	78.49	81.51	584	forward
CNT30500604	Prunus dulcis	Coffea canephora	60.59	73.01	81.51	449	forward
CNT30616460	Prunus dulcis	Sesamum indicum	59.78	30.87	81.49	443	forward
CNT30267761	Prunus dulcis	Chenopodium quinoa	63.83	57.97	81.18	473	forward
CNT3021333	Prunus dulcis	Citrullus lanatus	70.31	88.01	80.61	521	forward
CNT30403782	Prunus dulcis	Beta vulgaris	41.43	73.44	81.11	307	forward
CNT30524942	Prunus dulcis	Phaseolus vulgaris	77.19	85.25	81.99	572	forward
CNT30628702	Prunus dulcis	Vigna unguiculata	80.16	86.72	81.48	594	forward
CNT30195835	Prunus dulcis	Pisum sativum	34.28	100	83.07	254	forward
CNT30490956	Prunus dulcis	Olea europaea	42.38	74.76	81.21	314	forward
CNT3091554	Prunus dulcis	Solanum tuberosum	62.62	67.44	78.88	464	forward
CNT30304911	Prunus dulcis	Triticum aestivum	30.63	37.96	82.82	227	forward
CNT30400271	Prunus dulcis	Triticum turgidum	34.55	51.72	81.25	256	forward
CNT30559586	Prunus dulcis	Actinidia chinensis	42.78	39.28	82.65	317	forward
CNT30591924	Prunus dulcis	Musa acuminata	53.31	74.11	81.01	395	forward
CNT3087851	Prunus dulcis	Vigna radiata	55.74	45.19	82.32	413	forward
CNT30235097	Prunus dulcis	Brassica oleracea	79.22	73.28	81.6	587	forward
CNT30554593	Prunus dulcis	Oryza glaberrima	20.92	48.44	85.16	155	forward
CNT30171519	Prunus dulcis	Trifolium pratense	17.14	37.35	87.4	127	forward
CNT30312432	Prunus dulcis	Camelina sativa	50.88	96.92	84.35	377	forward
CNT30263459	Prunus dulcis	Brassica rapa	63.83	87.43	82.03	473	forward
CNT30468704	Prunus dulcis	Saccharum spontaneum	37.65	22.65	81	279	forward
CNT30205024	Prunus dulcis	Helianthus annuus	60.19	68.3	80.04	446	forward
CNT30713436	Prunus dulcis	Malus domestica golden	34.28	78.88	86.61	254	forward
CNT30688581	Prunus dulcis	Triticum urartu	35.09	44.75	82.31	260	forward
CNT30341750	Prunus dulcis	Eragrostis tef	49.66	67.9	81.25	368	forward
CNT30476914	Prunus dulcis	Arabidopsis halleri	70.31	93.04	81.57	521	forward
CNT30366570	Prunus dulcis	Sorghum bicolor	49.26	59.64	81.64	365	forward
CNT30596736	Prunus dulcis	Oryza meridionalis	31.85	31.26	82.63	236	forward
CNT30354661	Prunus dulcis	Lactuca sativa	32.93	43.88	83.2	244	forward
CNT30410142	Prunus dulcis	Papaver somniferum	36.98	41.64	82.85	274	forward
CNT30573855	Prunus dulcis	Vitis vinifera	50.07	61.63	84.64	371	forward
CNT30705868	Prunus dulcis	Prunus avium	93.52	65.25	93.8	693	forward
CNT3028162	Prunus dulcis	Theobroma cacao	69.91	92.34	83.2	518	forward
CNT3051702	Prunus dulcis	Amborella trichopoda	63.43	76.8	78.72	470	forward
CNT3023412	Prunus dulcis	Populus trichocarpa	46.83	61.42	83.86	347	forward
CNT30577348	Prunus dulcis	Oryza barthii	20.92	60.31	85.16	155	forward
CNT30114394	Prunus dulcis	Ficus carica	36.84	45.88	84.25	273	forward

Expression of CNT3042412

Peptides detected in this lncRNA

>peptide 1 (45 aa)
LIIISGKSMSKELKRIINHVRVIIPLISTDQSTTLSNSDAISAVQ*

>peptide 2 (29 aa)
LNNYKRQVNEQGTEEDYKSCESNNPTHKH*

>peptide 3 (52 aa)
MEMWGCRRATLGCRKVMWDYMQVKSGCKQVMSGCKQVMLDCNLVKLDCNLEM*

Sequence

>CNT3042412
CTTAATAATTATAAGCGGCAAGTCAATGAGCAAGGAACTGAAGAGGATTATAAATCATGTGAGAGTAATAATCCCACTCATAAGCACTGATCAGTCAACC
ACACTCAGCAACTCTGATGCCATAAGTGCAGTTCAATAGACAGCTCACCTGTAATTTGGAGACGTAGGACTATATGGACTAGATGGTGATAATCTTGGGC
TGCTTGGAGAGTATGCCGACGATGGACTGTATTTGGCTGACTGAGGATTGTAACTTGGAGATGTAGGGCTATAGCTGGGAGAAGTTGGACTATAACTAGG
AGAAGTTGGGCTGTAACCAGGAGAAGTTGGGCTGTAGGCTGGTGAGGTTGGGCTGTAGGATGGAGATGTGGGGCTGTAGGAGGGCGACGTTGGGCTGTAG
GAAGGTGATGTGGGACTATATGCAGGTGAAGTCGGGCTGTAAGCAGGTGATGTCGGGCTGTAAGCAGGTGATGTTGGACTGTAACTTGGTGAAGTTGGAC
TGTAACTTGGAGATGTAGGGCTGTAACTTGGAGATGTGGGGCTGTAACTTGGAGAAGTGGGGCTATAGCTGGGTGAGGTGGGTGAGTATGATGGACTTGT
AGGAGAATAGGCCGGACTGGTTGGACTATAACCTGGAGAACTAGGACTATAGGTTGGAGAGGTGGGACTGTACCCAGGTGAAGTGGGGCTGTACCCGGGC
GAGGTGGGACTATAACCAGGGGACGTGGGACTGTATCCAGG