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Detailed information on CNT3023318


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSTUT001430, E-value = 5e-13

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535924Populus trichocarpaEucalyptus grandis18.9141.389.26121forward
CNT30516792Populus trichocarpaJuglans regia22.516.1884.72144forward
CNT30700805Populus trichocarpaQuercus lobata21.5645.5488.41138forward
CNT30267758Populus trichocarpaChenopodium quinoa11.0922.487.3271forward
CNT30403407Populus trichocarpaBeta vulgaris13.4421.2986.0586forward
CNT30628928Populus trichocarpaVigna unguiculata16.2520.8484.62104forward
CNT30608057Populus trichocarpaGossypium raimondii19.3820.9185.48124forward
CNT30476941Populus trichocarpaArabidopsis halleri23.2818.681.88149forward
CNT30154708Populus trichocarpaPrunus persica19.3837.6983.87124forward
CNT3027914Populus trichocarpaTheobroma cacao17.6637.7983.19113forward
CNT30114394Populus trichocarpaFicus carica22.524.283.33144forward

Expression of CNT3023318

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MPVMGCILLIGGCNLARLGCSQGRLGYRLVKWGCRMGMWGCKMGMWGCMMGRWGCMMGR*

>peptide 2 (57 aa)
MLDCTQVKWGCNWGMWGCSWGMWGCSSGKWGCSWGKWGCSSGKWGCSLVKWGSMMDL*

Sequence

>CNT3023318
TATAATTTGGAGATGTTGGACTGTAAGGACTGGCTGGTGACAATCTTGGACTGCTAGGTGAGTATGCCAGTGATGGGCTGTATTTTGCTGATTGGGGGTT
GTAACTTGGCGAGGTTGGGCTGTAGCCAGGGGAGGTTGGGCTATAGGCTGGTGAAGTGGGGCTGTAGGATGGGGATGTGGGGCTGTAAGATGGGGATGTG
GGGCTGTATGATGGGGAGGTGGGGCTGTATGATGGGGAGGTAGGGCTGTACGCAGGTGATGTTGGACTGTACGCAGGTGAAGTGGGGCTGTAACTGGGGG
ATGTGGGGCTGTAGCTGGGGGATGTGGGGCTGTAGCTCGGGGAAGTGGGGCTGTAGCTGGGGGAAGTGGGGCTGTAGCTCGGGGAAGTGGGGCTGTAGCT
TGGTGAAGTGGGGGAGTATGATGGACTTGTAGGAGAATAGGCAGGACTAGTTGGGCTATAACTAGGAGAACTGGGACTATAAGTGGGTGAGGTTGGGCTA
TAACTTGGGGAAGCAGGGCTATAACTTGGTGAGGCGGGGCTGTATGAAGGTGAAGTAGGACTGTATCCAGGACTGTAGACTGGAGATGATGGGCTGTAGC
CAATAGATGTTGAAACAGGAGATGTACTAGGAGAAAAGGC