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Detailed information on CNT30648253


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSTUT001430, E-value = 9e-55

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523536Rosa chinensisSetaria italica22.7926.980.92152forward
CNT30535924Rosa chinensisEucalyptus grandis24.7456.3183.03165forward
CNT30700805Rosa chinensisQuercus lobata28.7963.3784.9192forward
CNT30377104Rosa chinensisArabidopsis thaliana29.9928.3383.5200forward
CNT30500730Rosa chinensisCoffea canephora39.4330.4484.79263forward
CNT30616396Rosa chinensisSesamum indicum27.2935.6985.16182forward
CNT30506120Rosa chinensisNicotiana attenuata26.3930.0982.95176forward
CNT30591949Rosa chinensisMusa acuminata24.2933.3382.72162forward
CNT3087851Rosa chinensisVigna radiata37.1827.1379.84248forward
CNT30235097Rosa chinensisBrassica oleracea37.1830.9682.26248forward
CNT30508904Rosa chinensisSolanum lycopersicum37.6340.6181.27251forward
CNT30171519Rosa chinensisTrifolium pratense17.843584.03119forward
CNT30312353Rosa chinensisCamelina sativa23.2437.887.1155forward
CNT3079663Rosa chinensisBrassica juncea29.9937.5983200forward
CNT30263845Rosa chinensisBrassica rapa29.9957.1483200forward
CNT30713436Rosa chinensisMalus domestica golden25.0451.8683.83167forward
CNT30625277Rosa chinensisDaucus carota24.1426.2283.85161forward
CNT30680884Rosa chinensisTriticum urartu12.292087.882forward
CNT30350934Rosa chinensisEragrostis tef11.5420.9887.0177forward
CNT30354733Rosa chinensisLactuca sativa26.8420.3481.56179forward
CNT30642027Rosa chinensisCannabis sativa38.9840.7583.85260forward
CNT3028162Rosa chinensisTheobroma cacao34.0340.4682.38227forward
CNT3051605Rosa chinensisAmborella trichopoda28.1928.3681.91188forward
CNT3023412Rosa chinensisPopulus trichocarpa24.5929.0381.71164forward
CNT30176441Rosa chinensisVigna angularis34.9338.5180.69233forward
CNT30114394Rosa chinensisFicus carica21.8924.5486.3146forward

Expression of CNT30648253

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MREMLGCMMGKWGCKRGKSGCMRGKSGCKRGKSGCSLERLDCSLER*

>peptide 2 (61 aa)
MPDWLDYNLESLDYRLEKWDYNQGRWGCNLGMWGYNQGTWGCNLGMMDCSQGMMGCSLEMK*

Sequence

>CNT30648253
CTGTAATTTGGAGAGGTAGGACTATATGGGCTAGCTGGTGACAATCTTGGACTGCTCGGAGAGTAAGCTACCGATGGGCTATATTTTGCAGAAGGAGGAT
TGTAACTTGGAGAGGTAGGGCTATAACTAGGAGAGGTTGGACTATAACTTGGGGAAGTAGGGCTGTAACCAGGAGAAGTTGGGCTGTAGGCAGGTGAAGT
TGGGCTGTAGGAGGGGGATGTTGGGCTGTAGGAGGGGGATGTGGGGCTGTAGGAGGGCGAAGTGGGGCTGTAGGAGGGCGAAGTGGGCTGTATGAGGGAG
ATGTTGGGCTGTATGATGGGGAAGTGGGGCTGTAAGCGGGGGAAGTCGGGCTGTATGCGGGGGAAGTCGGGCTGTAAGCGGGGGAAGTCGGGCTGTAGCT
TGGAGAGGTTGGACTGTAGCTTGGAGAGGTAGGGCTGTAGCTTGGAGATGTAGGAGAGTAAGACGGACTTGTAGGAGAATATGCCGGACTGGTTGGACTA
TAACCTGGAGAGCTTGGACTATAGGTTGGAGAAGTGGGACTATAACCAGGGGAGGTGGGGCTGTAACCTGGGGATGTGGGGCTATAACCAGGGGACGTGG
GGCTGTAACCTGGGGATGATGGACTGTAGCCAGGGGATGATGGGCTGTAGCCTGGAGATGAAGTAGG