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Detailed information on CNT30705868


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000067, E-value = 7e-72

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523536Prunus aviumSetaria italica38.0471.579.7404forward
CNT30315993Prunus aviumCorylus avellana53.356.4381.98566forward
CNT30700805Prunus aviumQuercus lobata28.2599.0184.67300forward
CNT30376158Prunus aviumArabidopsis thaliana69.878379.78742forward
CNT30616482Prunus aviumSesamum indicum81.3656.6678.59864forward
CNT30267761Prunus aviumChenopodium quinoa49.0663.8579.65521forward
CNT30378908Prunus aviumManihot esculenta71.3780.382.72758forward
CNT30628702Prunus aviumVigna unguiculata55.3785.8480.78588forward
CNT3042412Prunus aviumPrunus dulcis65.2593.5293.8693forward
CNT3087851Prunus aviumVigna radiata63.7574.0780.06677forward
CNT30234460Prunus aviumBrassica oleracea58.9589.0582.27626forward
CNT30554721Prunus aviumOryza glaberrima30.8935.0879.88328forward
CNT30145737Prunus aviumMedicago truncatula26.1845.1381.29278forward
CNT30256655Prunus aviumAvena sativa19.445.8882.52206forward
CNT30312353Prunus aviumCamelina sativa37.1996.3485.06395forward
CNT3076593Prunus aviumBrassica juncea41.7181.1482.17443forward
CNT30263540Prunus aviumBrassica rapa60.6499.8482.45644forward
CNT30216750Prunus aviumKalanchoe fedtschenkoi42.8492.8679.78455forward
CNT30205370Prunus aviumHelianthus annuus22.9837.3782.79244forward
CNT30687113Prunus aviumTriticum urartu32.1164.179.47341forward
CNT30350937Prunus aviumEragrostis tef24.7647.5682.51263forward
CNT30354661Prunus aviumLactuca sativa22.9843.8883.2244forward
CNT30154712Prunus aviumPrunus persica73.3510092.68779forward
CNT30410142Prunus aviumPapaver somniferum44.0771.1280.77468forward
CNT3028162Prunus aviumTheobroma cacao49.6293.9481.59527forward
CNT30114394Prunus aviumFicus carica25.7145.8887.55273forward

Expression of CNT30705868

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MPFLQHREKTGHLKWVTDEGLGSANNLETSCPHDMEFPTLENEMVSYRNQDHPYN*

>peptide 2 (64 aa)
MWDYMQVKSGCKQVMSGCKQVMLDCNLVKLDCNLEKWDCNLEKWDCNLEKWGYSWVRWVSMMDL*

>peptide 3 (35 aa)
KELQRLINHVRVIIPLISTDQSTTLSNSDAISAVR*

>peptide 4 (69 aa)
MVTFLDCLESMPTMDCIWLTEDCNLEMWGYSWEKLGCNQEKLGCRPVRLGCRMEMWGCRRATLGCRKAM*

Sequence

>CNT30705868
CAAGGAACTGCAGAGGCTTATAAATCATGTGAGAGTAATAATCCCACTCATAAGCACTGATCAGTCAACCACACTCAGCAACTCTGATGCCATAAGTGCA
GTTCGATAGACAGCTCACCTGTAATTTGGAGACGTAGGACTATATGGACTAGATGGTGACATTCTTGGACTGCTTGGAGAGTATGCCGACGATGGACTGT
ATTTGGCTGACTGAGGATTGTAACTTGGAGATGTGGGGCTATAGCTGGGAGAAGTTGGGCTGTAACCAGGAGAAGTTGGGCTGTAGGCCGGTGAGGTTGG
GCTGTAGGATGGAGATGTGGGGCTGTAGGAGGGCGACGTTGGGCTGTAGGAAGGCGATGTAGGGCTGTAGGAAGGTGATGTGGGACTATATGCAGGTGAA
GTCGGGCTGTAAGCAGGTGATGTCGGGCTGTAAGCAGGTGATGTTGGACTGTAACTTGGTGAAGTTGGACTGTAACTTGGAGAAGTGGGACTGTAACTTG
GAGAAGTGGGACTGTAACTTGGAGAAGTGGGGCTATAGCTGGGTGAGGTGGGTGAGTATGATGGACTTGTAGGAGAATAGGCCGGACTGGTTGGACTATA
ACCTGGAGAACTAGGACTATAGGTTGGAGAGGTGGGACTATAACCAGGGGATGTGGGACTGTATCCAGGGGAGGACGGACTGTAGCCAGGGGATGATGGG
CTGTAGCCCGGAGATGAAGTAGGAGAGAATGCCATTCCTCCAACATAGGGAGAAAACTGGGCATCTGAAATGGGTGACAGACGAAGGTTTGGGCTCAGCA
AATAATTTGGAGACATCATGCCCTCATGATATGGAGTTCCCGACACTGGAGAACGAGATGGTGTCATACCGAAATCAAGACCATCCATATAACTAGGTAG
CTGGAGTTCAATTGCATTCTTCAACATCTCGTCATTGAGATACAGGGCACAGTCTCCTGTGCCAATGGGTGCAAGCTGGCCTAACATTATGTTTTCAGTT
ACACCTCTCAAATAATCTGTTTCTGCAAACACTGCAGCATCAAGAAGAATATCGACAGTTTC