Detailed information on CNT30403662


BLAST search results

BLAST vs Swiss-Prot:
sp|P18616|NRPB1_ARATH, E-value = 5e-21

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30700805Beta vulgarisQuercus lobata62.0898.3581.21298forward
CNT3017802Beta vulgarisZea mays52.2964.5282.07251forward
CNT3027914Beta vulgarisTheobroma cacao51.0481.9482.86245forward
CNT3035221Beta vulgarisCucumis melo27.9235.0882.09134forward
CNT30330871Beta vulgarisDioscorea rotundata56.0437.2183.27269forward
CNT30114394Beta vulgarisFicus carica5040.3480.83240forward

Expression of CNT30403662

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MWGCMMAKWGCTMATWGCMMATWGCTMVMQQERRPC*

>peptide 2 (37 aa)
MSEVWAKQVTWRHHPVMVRCSSNGGTCRRHPKFQTFHI

Sequence

>CNT30403662
CTGTAGTTTGGAGAGGTAGGACTGTAAGGACTGGAAGGTGATATTCTTGGACTGCTTGGAGAGTATGCAAGTGAGGGACTGTATTTGGCTGACGGATTAT
AGCTTGGAGATGTAGGACTATAGCTTGGAGATGTAGGACTATAGCTAGGAGACGTGGGACTATATCCTGGGGAAGTAGGACTGTAAGCAGGTGAAGTCGG
ACTATACGAAGGCGATGTGGGGCTGTATGATGGCGAAGTGGGGCTGTACGATGGCGACGTGGGGCTGTATGATGGCGACGTGGGGCTGTACGATGGTGAT
GCAGCAGGAGAGAAGGCCATGTTAGTAACAAAGGGAGAAAAGGCAGCATTCTCTGAGATGGGTGAATGTCGGAGGTTTGGGCTAAACAAGTAACTTGGAG
ACATCATCCCGTCATGGTAAGGTGTTCCAGCAATGGGGGAACGTGCAGGCGTCATCCCAAATTCCAAACCTTCCACATAA