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Detailed information on CNT30171519


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30536042Trifolium pratenseEucalyptus grandis65.5940.5581.17223forward
CNT30700805Trifolium pratenseQuercus lobata65.8873.9383.04224forward
CNT30727660Trifolium pratenseCorchorus capsularis61.4738.2180.86209forward
CNT30403468Trifolium pratenseBeta vulgaris59.7126.2380.79203forward
CNT30524942Trifolium pratensePhaseolus vulgaris66.7633.8386.34227forward
CNT30628784Trifolium pratenseVigna unguiculata62.3527.8687.74212forward
CNT30195835Trifolium pratensePisum sativum26.1835.0494.3889forward
CNT30710529Trifolium pratenseGlycine max58.8235.4689200forward
CNT3042412Trifolium pratensePrunus dulcis37.3517.1487.4127forward
CNT30559586Trifolium pratenseActinidia chinensis32.0613.5186.24109forward
CNT3087924Trifolium pratenseVigna radiata43.8249.0189.93149forward
CNT30145737Trifolium pratenseMedicago truncatula71.1839.2988.84242forward
CNT30312353Trifolium pratenseCamelina sativa29.7124.6388.12101forward
CNT30648253Trifolium pratenseRosa chinensis3517.8484.03119forward
CNT30625385Trifolium pratenseDaucus carota52.6517.7883.24179forward
CNT30366979Trifolium pratenseSorghum bicolor44.7124.8882.24152forward
CNT30620207Trifolium pratenseCajanus cajan40.596.4292.03138forward
CNT30705859Trifolium pratensePrunus avium37.351787.4127forward
CNT30642027Trifolium pratenseCannabis sativa37.3519.9185.04127forward
CNT3023412Trifolium pratensePopulus trichocarpa30.2918.2383.5103forward
CNT3035221Trifolium pratenseCucumis melo35.8831.9481.97122forward
CNT30176441Trifolium pratenseVigna angularis60.2933.8885.85205forward

Expression of CNT30171519

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MDLMETILDCLENMPMKDYTLQIVGCNLGK*

Sequence

>CNT30171519
CTATAGCTTGGAGACGTAGGACTATATGGACTTGATGGAGACAATCTTGGACTGCTTGGAGAATATGCCAATGAAGGACTATACTTTGCAGATTGTGGGT
TGTAACTTGGGGAAGTAGGACTATAGGATGGCGAAGTTGGACTGTATGATGGAGATGTGGGGCTATACCCAGGAGAGGTGGGGCTATAAGCAGGTGATGT
AGGACTATATGACGGAGAAGTGGGGCTGTAGCTGGGTGATGTGGGAGAGTAGGAAGGACTTGTAGGTGAATAAGCTGGGCTTGTAGGACTATATCCTGGA
GAGCTAGGACTGTATGTTGGAGAGGTAGGACTGTACCCAG