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Detailed information on CNT3051605


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523577Amborella trichopodaSetaria italica22.0223.5982.88146forward
CNT30536082Amborella trichopodaEucalyptus grandis87.3397.878.24579forward
CNT30315800Amborella trichopodaCorylus avellana27.4539.5784.07182forward
CNT30549101Amborella trichopodaIpomoea triloba24.7427.883.54164forward
CNT30700805Amborella trichopodaQuercus lobata25.1955.1283.23167forward
CNT30616482Amborella trichopodaSesamum indicum85.3737.1177.92566forward
CNT3021339Amborella trichopodaCitrullus lanatus78.5882.1880.23521forward
CNT30378927Amborella trichopodaManihot esculenta91.5598.0679.41607forward
CNT30403468Amborella trichopodaBeta vulgaris53.2445.6178.47353forward
CNT30524942Amborella trichopodaPhaseolus vulgaris36.536.0783.47242forward
CNT30489068Amborella trichopodaOlea europaea53.772.0680.34356forward
CNT30506120Amborella trichopodaNicotiana attenuata68.1777.2678.76452forward
CNT30708121Amborella trichopodaGlycine max40.7240.6682.59270forward
CNT3042435Amborella trichopodaPrunus dulcis78.5875.2978.31521forward
CNT30400271Amborella trichopodaTriticum turgidum62.4483.6479.23414forward
CNT30591924Amborella trichopodaMusa acuminata53.0966.0482.95352forward
CNT30234460Amborella trichopodaBrassica oleracea52.7949.7979.14350forward
CNT30668234Amborella trichopodaTriticum dicoccoides27.4530.9581.32182forward
CNT30312227Amborella trichopodaCamelina sativa29.2645.9782.47194forward
CNT3076593Amborella trichopodaBrassica juncea69.2384.0778.21459forward
CNT30263459Amborella trichopodaBrassica rapa26.5532.5382.39176forward
CNT30605857Amborella trichopodaGossypium raimondii91.5574.8578.09607forward
CNT30216752Amborella trichopodaKalanchoe fedtschenkoi31.0744.4981.55206forward
CNT30648253Amborella trichopodaRosa chinensis34.6934.4881.74230forward
CNT30205370Amborella trichopodaHelianthus annuus49.1749.9280.06326forward
CNT30713436Amborella trichopodaMalus domestica golden11.6123.9190.9177forward
CNT30688162Amborella trichopodaTriticum urartu63.862.9579.2423forward
CNT30350932Amborella trichopodaEragrostis tef49.6273.680.85329forward
CNT30620243Amborella trichopodaCajanus cajan32.4364.7680215forward
CNT30354603Amborella trichopodaLactuca sativa41.4840.6280.73275forward
CNT30154742Amborella trichopodaPrunus persica78.5862.178.5521forward
CNT30408809Amborella trichopodaPapaver somniferum91.770.3778.45608forward
CNT30573855Amborella trichopodaVitis vinifera74.9682.5679.88497forward
CNT30705859Amborella trichopodaPrunus avium33.3329.5981221forward
CNT3027914Amborella trichopodaTheobroma cacao36.9581.9481.63245forward
CNT30121049Amborella trichopodaCitrus clementina99.8561.1878.85662forward
CNT30150463Amborella trichopodaBrachypodium distachyon61.9946.7678.59411forward
CNT30498009Amborella trichopodaDigitaria exilis62.2942.1978.69413forward
CNT30551544Amborella trichopodaOryza brachyantha60.4857.779.05401forward

Expression of CNT3051605

Peptides detected in this lncRNA

>peptide 1 (52 aa)
CSLEMFGCKDWKETFLDCLENKQERDYTSPKGDCNSEKLGYSFGRSDYSLAM*

>peptide 2 (64 aa)
VVWRCLAVRTGRRHSWTAWRINKRGTILRRRGIVTRRSWAIASGGRTIAWRCRAITRRSGAISR*

>peptide 3 (36 aa)
MWGYSLVTWGYNSVKWENKMGLWENKQEKLGYSQES*

>peptide 4 (28 aa)
MWGYTLEMWGYSQEMWDYILEMMDCSLVM

Sequence

>CNT3051605
CTGTAGTTTGGAGATGTTTGGCTGTAAGGACTGGAAGGAGACATTCTTGGACTGCTTGGAGAATAAACAAGAGAGGGACTATACTTCGCCGAAGGGGGAT
TGTAACTCGGAGAAGTTGGGCTATAGCTTCGGGAGGTCGGACTATAGCTTGGCGATGTAGGGCTATAACCAGGAGAAGTGGGGCTATAAGCAGGTGAAGT
GGGACTGTATGAAGGTGAGGTTGGGCTATAGGAAGGTGATGTAGGGCTATAGGAAGGTGAAGTTGGGCTATAAGAAGGCGAGGTTGGGCTATAAGCAGGC
GAAGTTGGGCTGTAGGCTGGCGAGGTAGGGCTATAGGCTGGAGAGGTAGGGCTATAAACCGGAGACGTAGGACTATAGGCCGGAGATGTAGGACTATAGC
TCGGTGAGGTGGGGCTATAGCTAGGGGATGTGGGGCTATAGCTTGGTGACGTGGGGCTATAACTCGGTGAAGTGGGAGAATAAGATGGGCTTGTGGGAGA
ATAAGCAGGAGAAGTTGGGCTATAGCCAGGAGAGCTAGGGCTATACGTCGGAGAGGTTGGGCTGTAACCGGGGGATGTGGGGCTATACCCTGGAGATGTG
GGGCTATAGCCAGGAGATGTGGGACTATATCCTGGAGATGATGGACTGTAGCCTGGTGATGAA