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Detailed information on CNT30410142


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT000794, E-value = 8e-49

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523577Papaver somniferumSetaria italica31.4633.4481.16207forward
CNT30536082Papaver somniferumEucalyptus grandis89.3699.3279.76588forward
CNT30316024Papaver somniferumCorylus avellana57.7547.279.47380forward
CNT30700805Papaver somniferumQuercus lobata37.3981.1980.49246forward
CNT30500604Papaver somniferumCoffea canephora57.2961.379.58377forward
CNT30616442Papaver somniferumSesamum indicum65.6541.5480.56432forward
CNT30378908Papaver somniferumManihot esculenta72.6450.6479.71478forward
CNT3042412Papaver somniferumPrunus dulcis41.6436.9882.85274forward
CNT3091192Papaver somniferumSolanum tuberosum50.347.7682.78331forward
CNT30235097Papaver somniferumBrassica oleracea65.253.5680.89429forward
CNT30554634Papaver somniferumOryza glaberrima60.4948.1379.15398forward
CNT30312132Papaver somniferumCamelina sativa45.946.681.13302forward
CNT30605857Papaver somniferumGossypium raimondii93.1675.5980.26613forward
CNT30216750Papaver somniferumKalanchoe fedtschenkoi60.6481.4381.45399forward
CNT30713436Papaver somniferumMalus domestica golden44.5390.9979.52293forward
CNT30154742Papaver somniferumPrunus persica67.3352.881.26443forward
CNT30705868Papaver somniferumPrunus avium71.1244.0780.77468forward
CNT30109704Papaver somniferumOryza longistaminata25.8430.5882.94170forward
CNT30121121Papaver somniferumCitrus clementina69.9134.2880.87460forward

Expression of CNT30410142

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MITRRCGTVAGRCGTVARRCRTVPRRRRTVCRRGGAV*

>peptide 2 (57 aa)
MWDCSWEMWDCSSEMSDCTQETSDCMQERWGCMMARWGCRTARWGCRTARWGYMMVT*

Sequence

>CNT30410142
CTGTAATTTGGAGATGTATGACTGTATGGGCTAGACGGTGATATTCTTGGACTGCTTGGAGAGTATGCCAAAGATGGACTGTACTTTGCCGATGAAGGAT
GATAACTAGGAGATGTGGGACTGTAGCTGGGAGATGTGGGACTGTAGCTCGGAGATGTCGGACTGTACCCAGGAGACGTCGGACTGTATGCAGGAGAGGT
GGGGCTGTATGATGGCGAGGTGGGGCTGTAGGACGGCGAGGTGGGGCTGTAGGACGGCGAGGTGGGGCTATATGATGGTGACGTAGGACTGTATGATGGA
GAGGTAGGGCTATAGACTGGAGAGGTAGGGCTGTAAGCGGGGGAAGTGGGGCTGTAAGCCGGAGAAGTGGGGCTGTAGCTGGGGGAAGTGGGGCTATAGC
TTGGGGAAGTGGGGCTGTAACTTGGAGAAGTGGGGCTATAGCTCGGGGAAGTGGGGCTATAACTTGGTGATGTGGGGGAATAAGATGGGCTGGTTGGAGA
ATATGCAGGACTTGTTGGACTGTAACCAGGAGAGCTGGGGCTGTATGTAGGAGAGGTCGGGCTGTATCCAGGAGAAGTTGGGCTGTATCCAGGAGATGAC
GGGCTGTAGCCTGGAGATGATGGACTGTACCCCGGAGATAAAGTAGGAGAGAATGCCA