Detailed information on CNT30263629


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315764Brassica rapaCorylus avellana68.9460.480395forward
CNT30700805Brassica rapaQuercus lobata3769.9780.66212forward
CNT30377120Brassica rapaArabidopsis thaliana99.8390.2284.97572forward
CNT30500730Brassica rapaCoffea canephora65.4543.482.4375forward
CNT30616384Brassica rapaSesamum indicum68.9458.6180395forward
CNT30267763Brassica rapaChenopodium quinoa69.9857.5381.05401forward
CNT30379091Brassica rapaManihot esculenta50.7949.3284.54291forward
CNT30403407Brassica rapaBeta vulgaris62.1388.1278.65356forward
CNT30489068Brassica rapaOlea europaea80.9893.9381.25464forward
CNT30506119Brassica rapaNicotiana attenuata47.4768.1779.41272forward
CNT30710529Brassica rapaGlycine max73.1274.2980.91419forward
CNT30591824Brassica rapaMusa acuminata37.5254.4381.4215forward
CNT30354836Brassica rapaLactuca sativa34.5534.3282.83198forward
CNT30574226Brassica rapaVitis vinifera77.3188.7879.46443forward
CNT30705859Brassica rapaPrunus avium88.3167.7481.03506forward
CNT30642027Brassica rapaCannabis sativa79.5871.4782.24456forward
CNT3051546Brassica rapaAmborella trichopoda2630.9183.22149forward
CNT30121049Brassica rapaCitrus clementina52.882882.18303forward
CNT30330871Brassica rapaDioscorea rotundata35.9528.4982.52206forward

Expression of CNT30263629

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MSDCKMVKLDCNSGMLGCSLETLDCSLETLGYS*

Sequence

>CNT30263629
GGACTGTAAGGGCTAGCTGGTGATAGTCTTGCATTGCTAGGGGAGTAAGCCAGAGATGGACTGTATTTAGCAGACTGAGGGTTGTAGCTTGGAGACGTCG
GACCGTAACTAGGAGACGTTGGACTGTAGCTTGGAGATGTAGGGCTGTACCCAGGAGATGTAGGGCTGTATGCAGGTGAAGTAGGACTGTAAGAAGGAGA
TGTTGGACTGTAGGAGGGTGAAGTAGGGCTGTAAGAAGGCGATGTCGGACTGTAAGATGGTGAAGTTGGACTGTAACTCGGGGATGTTGGGCTGTAGCTT
GGAGACGTTGGACTGTAGCTTGGAGACGTTGGGCTATAGCTAGGAGACGTTGGGCTGTAGCTAGGGGAGGTGGGAGAATATGAAGGACTTGTTGGAGAAT
AAGCAGGGCTAGTTGGGCTATAGCCAGGAGAACTAGGACTGTACGTGGGAGAAGTGGGACTATAGCCAGGAGAAGTCGGACTGTATCCAGGTGAAGTCGG
ACTGTAACCAGGAGAAGTAGGACTGTAACCAGGAGAAGATGGGCTGTAGCCTGGAGATGAAGAAGGAGAAAAC