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Detailed information on CNT30150463


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675703Brachypodium distachyonSetaria viridis27.7686.8383.61244forward
CNT30523536Brachypodium distachyonSetaria italica67.01104.2581.49589forward
CNT30536082Brachypodium distachyonEucalyptus grandis25.8238.3481.94227forward
CNT30316008Brachypodium distachyonCorylus avellana31.6342.5180.94278forward
CNT30549101Brachypodium distachyonIpomoea triloba27.5341.0280.99242forward
CNT30700805Brachypodium distachyonQuercus lobata20.2558.7583.15178forward
CNT30377104Brachypodium distachyonArabidopsis thaliana37.3246.4680.49328forward
CNT30500604Brachypodium distachyonCoffea canephora29.9242.7682.51263forward
CNT30616515Brachypodium distachyonSesamum indicum41.353.8681.27363forward
CNT30269270Brachypodium distachyonChenopodium quinoa46.7678.2981.51411forward
CNT30379051Brachypodium distachyonManihot esculenta40.6151.1579.55357forward
CNT30524932Brachypodium distachyonPhaseolus vulgaris29.5855.4480260forward
CNT30628928Brachypodium distachyonVigna unguiculata33.2258.5279.79292forward
CNT3042435Brachypodium distachyonPrunus dulcis36.7546.6880.5323forward
CNT30193210Brachypodium distachyonSecale cereale24.3510090.65214forward
CNT30559890Brachypodium distachyonActinidia chinensis44.2556.9580.46389forward
CNT30234460Brachypodium distachyonBrassica oleracea38.4548.0880.18338forward
CNT30554721Brachypodium distachyonOryza glaberrima85.4480.3284.29751forward
CNT30442780Brachypodium distachyonAegilops tauschii90.2210088.02793forward
CNT30312353Brachypodium distachyonCamelina sativa34.0272.9380.94299forward
CNT3076593Brachypodium distachyonBrassica juncea37.0959.7179.75326forward
CNT30216750Brachypodium distachyonKalanchoe fedtschenkoi38.1168.3780.6335forward
CNT3067979Brachypodium distachyonLeersia perrieri38.4593.8986.09338forward
CNT30205370Brachypodium distachyonHelianthus annuus33.3344.8784.3293forward
CNT30713436Brachypodium distachyonMalus domestica golden1951.8683.23167forward
CNT30688162Brachypodium distachyonTriticum urartu7699.487.43668forward
CNT30350932Brachypodium distachyonEragrostis tef39.1476.9688.95344forward
CNT30476941Brachypodium distachyonArabidopsis halleri23.0925.3483.25203forward
CNT30620243Brachypodium distachyonCajanus cajan27.5372.8982.64242forward
CNT30154777Brachypodium distachyonPrunus persica36.7540.3880.5323forward
CNT30573870Brachypodium distachyonVitis vinifera51.4264.1178.76452forward
CNT30705862Brachypodium distachyonPrunus avium38.7932.1181.23341forward
CNT3028162Brachypodium distachyonTheobroma cacao23.7837.2584.69209forward
CNT3051605Brachypodium distachyonAmborella trichopoda46.7661.9978.59411forward
CNT30109704Brachypodium distachyonOryza longistaminata26.8542.4587.29236forward
CNT30121049Brachypodium distachyonCitrus clementina39.9332.4480.06351forward
CNT30330867Brachypodium distachyonDioscorea rotundata39.4847.9980.69347forward
CNT30584450Brachypodium distachyonEchinochloa crusgalli67.0178.6484.72589forward
CNT30551544Brachypodium distachyonOryza brachyantha82.03103.7483.36721forward

Expression of CNT30150463

Peptides detected in this lncRNA

>peptide 1 (28 aa)
MVSQKARHAQVSCQYILNLQHSSGAEAQW

>peptide 2 (29 aa)
MLGCIQAMSGCMQAMSGCTRAMSGCMMET*

>peptide 3 (85 aa)
MMAMSGCMMEMSGCMQEMLGCMLERSDYKLAMWDCSSEKWDYNLVMWDCSLAMWDCSLEMWGSMTDWLESTMDLLGSTTDLLGCS*

>peptide 4 (32 aa)
MDCNHHQRMGCSLKGQVRMPCPQHMGRTEHLK*

>peptide 5 (43 aa)
CSLEKSDCMGSSSLGCLENKHVKGCTWPKKDCSSVKLDCSLAK*

Sequence

>CNT30150463
CTGTAGTTTGGAGAAGTCTGACTGTATGGGCTCATCATCCTTGGGCTGCTTGGAGAATAAGCATGTGAAGGGCTGTACTTGGCCGAAGAAGGATTGTAGC
TCGGTGAAGTTGGACTGTAGTTTGGCGAAGTAGGGCTGTAGCTCGGCGATGTTGGGCTGTATCCAGGCGATGTCGGGCTGTATGCAGGCGATGTCGGGCT
GTACGAGGGCGATGTCGGGCTGTATGATGGAGACGTAGGGCTGTATGAAGGTGAAGTAGGGCTGTATGATGGCGATGTCGGGCTGTATGATGGAGATGTC
GGGCTGTATGCAGGAGATGTTGGGCTGTATGCTGGAGAGGTCGGACTATAAACTGGCGATGTGGGACTGTAGCTCGGAGAAGTGGGACTATAACTTGGTG
ATGTGGGACTGTAGCTTGGCGATGTGGGACTGTAGCTTGGAGATGTGGGGGAGTATGACGGACTGGTTGGAGAGTACGATGGACTTGTTGGGGAGTACGA
CGGACTTGTTGGGCTGTAGCTAGGAGAGCCAGGCGTATATGATGGAGAAGTGGGACTATAGCTGGGTGATGCGGGACTATATGATGGAGAAGTCGGGCTG
TATCCCTGTCCTGGCCCTGGACTGAAGACTGGAGAAGATGGACTGTAACCACCACCAGAGGATGGGCTGTAGCTTGAAGGGACAGGTGAGAATGCCATGC
CCCCAACATATGGGGAGAACTGAGCATCTGAAATAGGGGAAGACCTGAAATTAGGACTCAACATTGGTGACATCATTCCTCCATCATGGTATGGTGTCCC
AGAAGGCGAGGCACGCGCAGGTGTCATGCCAATATATTCTAAACCTTCAACATAGCTCGGGAGCTGAAGCTCAATGGCC