Detailed information on CNT30675703


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523536Setaria viridisSetaria italica92.1745.8491.12259forward
CNT30536042Setaria viridisEucalyptus grandis87.1944.5581.22245forward
CNT30700805Setaria viridisQuercus lobata73.3167.9981.07206forward
CNT30500730Setaria viridisCoffea canephora39.512.8585.59111forward
CNT30403407Setaria viridisBeta vulgaris73.3150.9980.1206forward
CNT30193210Setaria viridisSecale cereale61.2180.3782.56172forward
CNT30304911Setaria viridisTriticum aestivum101.0747.4982.75284forward
CNT30400271Setaria viridisTriticum turgidum89.3250.7182.87251forward
CNT30554779Setaria viridisOryza glaberrima87.5426.3181.71246forward
CNT30442780Setaria viridisAegilops tauschii98.5834.9381.59277forward
CNT30256655Setaria viridisAvena sativa89.3255.984.86251forward
CNT30668234Setaria viridisTriticum dicoccoides45.221.685.04127forward
CNT30468674Setaria viridisSaccharum spontaneum97.1529.7786.45273forward
CNT30141877Setaria viridisLolium perenne71.1744.6483200forward
CNT3016764Setaria viridisZea mays91.4645.7386.77257forward
CNT3067990Setaria viridisLeersia perrieri49.1136.2284.78138forward
CNT30713436Setaria viridisMalus domestica golden79.7269.5780.8224forward
CNT30625502Setaria viridisDaucus carota65.8422.7382.7185forward
CNT30688491Setaria viridisTriticum urartu101.0766.3682.75284forward
CNT30341750Setaria viridisEragrostis tef85.7744.4687.55241forward
CNT30366979Setaria viridisSorghum bicolor96.844.5286.03272forward
CNT30596736Setaria viridisOryza meridionalis86.1232.0581.4242forward
CNT30354836Setaria viridisLactuca sativa65.1231.7281.97183forward
CNT30370935Setaria viridisOryza glumipatula7922.9381.98222forward
CNT30154708Setaria viridisPrunus persica80.786980.62227forward
CNT3027914Setaria viridisTheobroma cacao87.5482.2781.71246forward
CNT30109704Setaria viridisOryza longistaminata64.0632.3782.22180forward
CNT30330871Setaria viridisDioscorea rotundata88.6134.4481.12249forward
CNT30150463Setaria viridisBrachypodium distachyon86.8327.7683.61244forward
CNT30103004Setaria viridisOryza rufipogon95.0226.7881.27267forward
CNT30577473Setaria viridisOryza barthii7940.7381.98222forward
CNT30584450Setaria viridisEchinochloa crusgalli99.2937.2589.61279forward
CNT30497833Setaria viridisDigitaria exilis82.9226.4290.56233forward
CNT30558075Setaria viridisPanicum hallii10035.6187.19281forward
CNT30551544Setaria viridisOryza brachyantha96.839.1480.51272forward

Expression of CNT30675703

Peptides detected in this lncRNA

>peptide 1 (35 aa)
CSSERSDCMESSLDCLESKHAKGCIWLMKDCSSEK*

Sequence

>CNT30675703
TGTAGTTCGGAGAGGTCTGACTGTATGGAGTCATCCTTGGACTGCTTGGAGAGTAAGCATGCGAAGGGCTGTATTTGGCTGATGAAGGATTGTAGCTCGG
AGAAGTAGGACTGTAGCTTGGAGATGTCGGGCTGTAACTTGGTGATGTTGGGCTGTACGAGGGGGAGGTAGGACTGTATGATGGGGATGTAGGGCTGTAT
GAAGGAGATGTAGGGCTGTATGAAGGCGACGTAGGGCTGTAAGACGGGGATGTTGGGCTATAAGAGGGGGATGTGGGGCTG