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Detailed information on CNT30591858


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523536Musa acuminataSetaria italica60.3654.1679.74306forward
CNT30640872Musa acuminataNymphaea colorata60.7540.6981.82308forward
CNT30549101Musa acuminataIpomoea triloba55.6247.880.85282forward
CNT30700805Musa acuminataQuercus lobata48.3280.8681.63245forward
CNT30500730Musa acuminataCoffea canephora75.1544.180.58381forward
CNT30524942Musa acuminataPhaseolus vulgaris74.9556.6380380forward
CNT30628902Musa acuminataVigna unguiculata77.3288.4979.34392forward
CNT30710467Musa acuminataGlycine max74.9552.5680.26380forward
CNT3042435Musa acuminataPrunus dulcis80.2858.8280.84407forward
CNT3091192Musa acuminataSolanum tuberosum51.8737.9580.61263forward
CNT30400271Musa acuminataTriticum turgidum43.7944.8581.08222forward
CNT3087924Musa acuminataVigna radiata47.7379.6180.17242forward
CNT30508904Musa acuminataSolanum lycopersicum69.0356.6379.14350forward
CNT30554779Musa acuminataOryza glaberrima78.1142.3579.29396forward
CNT30145737Musa acuminataMedicago truncatula40.0432.9582.27203forward
CNT30312316Musa acuminataCamelina sativa45.9662.381.12233forward
CNT3079663Musa acuminataBrassica juncea71.267.8679.5361forward
CNT3016767Musa acuminataZea mays51.8734.7980.99263forward
CNT30605857Musa acuminataGossypium raimondii93.8958.6980.67476forward
CNT30205386Musa acuminataHelianthus annuus65.6846.5780.18333forward
CNT30688491Musa acuminataTriticum urartu57.9968.6979.25294forward
CNT30341749Musa acuminataEragrostis tef70.4180.2279.83357forward
CNT30366570Musa acuminataSorghum bicolor69.0357.1980.86350forward
CNT30354836Musa acuminataLactuca sativa65.0957.1980.3330forward
CNT30154777Musa acuminataPrunus persica84.4253.581.07428forward
CNT30410012Musa acuminataPapaver somniferum71.9996.0580.27365forward
CNT30705862Musa acuminataPrunus avium64.8930.9881.76329forward
CNT30641843Musa acuminataCannabis sativa88.9593.7680.71451forward
CNT3027877Musa acuminataTheobroma cacao71.491.6580.66362forward
CNT3051546Musa acuminataAmborella trichopoda53.0655.8184.39269forward
CNT30103220Musa acuminataOryza rufipogon78.1142.6379.55396forward
CNT30497833Musa acuminataDigitaria exilis5732.7780.97289forward
CNT30176441Musa acuminataVigna angularis83.0469.5978.86421forward
CNT30551544Musa acuminataOryza brachyantha50.8937.1281.4258forward
CNT30114394Musa acuminataFicus carica47.1440.1780.75239forward
CNT30335476Musa acuminataCynara cardunculus45.1718.8579.91229forward

Expression of CNT30591858

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MMVKSGYMKVMLGYMKVMSDYRKVMLDYRMEMLDCRLGKSDCKLEK*

>peptide 2 (45 aa)
CNLEMIDRMDWMVTALDCLENKQAKDCTLLRQDCNLEMWGYNLGM*

Sequence

>CNT30591858
TGTAATTTGGAGATGATTGACCGTATGGACTGGATGGTGACAGCCTTGGACTGCTTGGAGAATAAGCAAGCGAAGGACTGTACTTTGCTGAGGCAGGATT
GTAACTTGGAGATGTGGGGCTATAACTTGGGGATGTAGGACTATAGCTAGGAGATGTTGGACTGTATCCCGGAGAAGTTGGGCTATAGGCAGGTGAGGTA
GGACTGTATGATGGTGAAGTCGGGCTATATGAAGGTGATGTTGGGCTATATGAAGGTGATGTCGGACTATAGGAAGGTGATGTTGGACTATAGGATGGAG
ATGTTGGACTGTAGGCTGGGGAAGTCGGACTGTAAACTGGAGAAGTAGGGCTGTAGCTTGGCGAAGTAGGACTGTAACTGGGGGAAGTTGGGCTGTAACT
GGGGGAAGTAGGACTATAAGTAGGAGATGTAGGGCTATAACTGGGAGAGGTCGGGCTGTAGCTGGGAGAAGTTGGCGAATATGATGGACTTGTCGGAGAG
TAAGCAG