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Detailed information on CNT30535924


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSTUT001430, E-value = 4e-12

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30700805Eucalyptus grandisQuercus lobata96.9393.7387.68284forward
CNT30710559Eucalyptus grandisGlycine max97.9543.4880.14287forward
CNT30193210Eucalyptus grandisSecale cereale29.3540.1988.3786forward
CNT30307041Eucalyptus grandisTriticum aestivum57.6831.5383.43169forward
CNT30400472Eucalyptus grandisTriticum turgidum59.7317.5583.43175forward
CNT30559586Eucalyptus grandisActinidia chinensis95.934.8282.21281forward
CNT30442780Eucalyptus grandisAegilops tauschii61.0922.5781.56179forward
CNT30648253Eucalyptus grandisRosa chinensis80.5535.3883.05236forward
CNT30625277Eucalyptus grandisDaucus carota88.7442.3579.62260forward
CNT30681212Eucalyptus grandisTriticum urartu55.2934.3984.57162forward
CNT30341751Eucalyptus grandisEragrostis tef61.0936.9886.03179forward
CNT30366979Eucalyptus grandisSorghum bicolor59.7328.6482.86175forward
CNT30354836Eucalyptus grandisLactuca sativa58.729.8185.47172forward
CNT3027914Eucalyptus grandisTheobroma cacao93.8691.9784.73275forward
CNT3023318Eucalyptus grandisPopulus trichocarpa96.9344.3882.75284forward
CNT30149777Eucalyptus grandisBrachypodium distachyon61.0919.4482.12179forward
CNT30584594Eucalyptus grandisEchinochloa crusgalli66.2131.3985.05194forward
CNT30335477Eucalyptus grandisCynara cardunculus58.0244.7483.53170forward

Expression of CNT30535924

Peptides detected in this lncRNA

>peptide 1 (38 aa)
CSLEMWDCKDWTVTILDCLVSTPMMGCILPTEGCNSEK*

>peptide 2 (45 aa)
MLGCNQEMWGYKLVKLGCRMVMLGCMKERSGYKMVRWGCMQGKWGY

Sequence

>CNT30535924
CTGTAGTTTGGAGATGTGGGACTGTAAGGACTGGACGGTGACAATCTTGGACTGCTTGGTGAGTACGCCAATGATGGGCTGTATTTTGCCGACTGAGGGT
TGTAACTCGGAGAAGTAGGGCTGTAGCTCGGTGAAGTTGGGCTGTAACTTGGTGATGTTGGGCTGTAACCAGGAGATGTGGGGCTATAAGCTGGTGAAGT
TGGGCTGTAGGATGGTGATGTTGGGCTGTATGAAGGAGAGGTCGGGCTATAAGATGGTGAGGTGGGGCTGTATGCAGGGGAAGTGGGGCTATA