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Detailed information on CNT30330871


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675703Dioscorea rotundataSetaria viridis34.4488.6181.12249forward
CNT30640872Dioscorea rotundataNymphaea colorata36.7935.1487.22266forward
CNT30549216Dioscorea rotundataIpomoea triloba70.489.4679.76509forward
CNT30700805Dioscorea rotundataQuercus lobata35.5584.8283.27257forward
CNT30500604Dioscorea rotundataCoffea canephora27.6632.5282.5200forward
CNT3021333Dioscorea rotundataCitrullus lanatus59.6172.879.12431forward
CNT30727661Dioscorea rotundataCorchorus capsularis35.8241.3782.63259forward
CNT30379091Dioscorea rotundataManihot esculenta39.5648.4781.82286forward
CNT30403662Dioscorea rotundataBeta vulgaris37.2156.0483.27269forward
CNT30628784Dioscorea rotundataVigna unguiculata37.6235.7481.25272forward
CNT30710559Dioscorea rotundataGlycine max38.8742.5880.43281forward
CNT3042435Dioscorea rotundataPrunus dulcis43.8545.8182.33317forward
CNT3091337Dioscorea rotundataSolanum tuberosum35.1331.1381.89254forward
CNT30304911Dioscorea rotundataTriticum aestivum34.7241.9781.27251forward
CNT30559889Dioscorea rotundataActinidia chinensis53.9495.5980.51390forward
CNT30591924Dioscorea rotundataMusa acuminata44.8160.7980.56324forward
CNT30263629Dioscorea rotundataBrassica rapa28.4935.9582.52206forward
CNT30468540Dioscorea rotundataSaccharum spontaneum37.6231.4182.35272forward
CNT30607691Dioscorea rotundataGossypium raimondii43.8546.8282.97317forward
CNT30216752Dioscorea rotundataKalanchoe fedtschenkoi19.3630.2485.71140forward
CNT30648676Dioscorea rotundataRosa chinensis39.1437.9982.33283forward
CNT30205103Dioscorea rotundataHelianthus annuus34.7235.4581.27251forward
CNT30688162Dioscorea rotundataTriticum urartu34.7237.3581.27251forward
CNT30350935Dioscorea rotundataEragrostis tef21.4420.8385.81155forward
CNT30354818Dioscorea rotundataLactuca sativa64.8789.6778.89469forward
CNT30154791Dioscorea rotundataPrunus persica56.4352.5181.37408forward
CNT30573870Dioscorea rotundataVitis vinifera38.8739.8683.99281forward
CNT30705859Dioscorea rotundataPrunus avium55.7453.9581.39403forward
CNT30642027Dioscorea rotundataCannabis sativa73.4483.2380.6531forward
CNT3023412Dioscorea rotundataPopulus trichocarpa16.4621.0682.35119forward
CNT30121049Dioscorea rotundataCitrus clementina42.628.4783.77308forward
CNT30114394Dioscorea rotundataFicus carica32.6439.6680.51236forward
CNT3049544Dioscorea rotundataCucumis sativus34.330.9681.45248forward

Expression of CNT30330871

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MLGYNQERLDCIPERMGCIQEMMDCILGMRWERSPSHQHMEKTEHL*

>peptide 2 (39 aa)
MMVRSGCTMVRSGCMMGMLGCMLVRLGYTPGMWDCKLGK*

Sequence

>CNT30330871
GAAGGAGATATCCTTGGACTGCTAGGAGAGTATGCAATTGAAGGGCTGTATTTAGCTGAAGGAGGATTGTAACTTGGAGATGTAGGGCTATAACTGGGAG
ATGTGGGGCTGTAGCTGGGTGATGTGGGACTATACCCAGGAGAGGTAGGACTGTAGGCAGGCGATGTAGGGCTATAAGAAGGCGAGGTCGGGCTGTATGA
TGGTGAGGTCGGGCTGTACGATGGTGAGGTCGGGCTGTATGATGGGGATGTTGGGCTGTATGCTGGTGAGGTTGGGCTATACACCGGGGATGTGGGACTG
TAAACTGGGGAAGTAGGACTGTAGCTAGGTGAAGTTGGGGAGTAAGATGGGCTGGTTGGAGAATAGGCAGGACTTGTTGGACTATAACCAGGAGAGCTAG
GACTGTATGTTGGCGATGTAGGACTGTAGCCAGGTGATGTAGGACTGTATCCAGGGGATGTTGGGCTATAACCAGGAGAGGTTGGACTGTATCCCGGAGA
GGATGGGCTGTATCCAGGAGATGATGGACTGTATCCTGGGGATGAGGTGGGAGAGAAGCCCATCCCACCAACATATGGAGAAAACTGAGCATCTGTAATG
GGTGAAGAGCGAGCATTTGGACTAAGGAGATAGCTGGGAGACATCATTCCCTCATGATATGGCGTCCCTGAGACAGGTGAACGAGATGGTGTCATGCCAA
AGTCCAATCCCTCCATGTAACTA