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Detailed information on CNT30235097


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523536Brassica oleraceaSetaria italica43.761.9580350forward
CNT30640872Brassica oleraceaNymphaea colorata65.0468.8282.15521forward
CNT30536042Brassica oleraceaEucalyptus grandis68.5499.8279.42549forward
CNT30316118Brassica oleraceaCorylus avellana77.2886.6979.48619forward
CNT30549166Brassica oleraceaIpomoea triloba48.9458.3380.1392forward
CNT30516897Brassica oleraceaJuglans regia93.1384.3980.97746forward
CNT30700805Brassica oleraceaQuercus lobata33.2187.7981.2266forward
CNT30376379Brassica oleraceaArabidopsis thaliana92.0199.0687.92737forward
CNT30500730Brassica oleraceaCoffea canephora56.0551.9781.96449forward
CNT30616460Brassica oleraceaSesamum indicum73.7841.1880.2591forward
CNT30267761Brassica oleraceaChenopodium quinoa69.6668.3880.29558forward
CNT3021333Brassica oleraceaCitrullus lanatus68.4192.5780.66548forward
CNT30524942Brassica oleraceaPhaseolus vulgaris63.9276.378.52512forward
CNT30489068Brassica oleraceaOlea europaea37.761.1383.11302forward
CNT30506120Brassica oleraceaNicotiana attenuata51.3170.2679.32411forward
CNT30708216Brassica oleraceaGlycine max63.5591.0680.55509forward
CNT3042412Brassica oleraceaPrunus dulcis73.2879.2281.6587forward
CNT3091701Brassica oleraceaSolanum tuberosum59.0562.2481.18473forward
CNT30591924Brassica oleraceaMusa acuminata37.0855.7281.14297forward
CNT3087851Brassica oleraceaVigna radiata80.470.4679.97644forward
CNT30508722Brassica oleraceaSolanum lycopersicum58.5591.4280.81469forward
CNT30311656Brassica oleraceaCamelina sativa66.7996.485.98535forward
CNT30468644Brassica oleraceaSaccharum spontaneum29.7125.2982.35238forward
CNT3067979Brassica oleraceaLeersia perrieri35.4678.8980.99284forward
CNT30648253Brassica oleraceaRosa chinensis79.1595.0579.18634forward
CNT30713436Brassica oleraceaMalus domestica golden38.0894.7280305forward
CNT30625810Brassica oleraceaDaucus carota79.0393.3677.88633forward
CNT30688491Brassica oleraceaTriticum urartu36.5868.4682.25293forward
CNT30476941Brassica oleraceaArabidopsis halleri98.3898.3886.55788forward
CNT30366570Brassica oleraceaSorghum bicolor39.9552.2980.94320forward
CNT30354623Brassica oleraceaLactuca sativa50.0662.5679.8401forward
CNT30154712Brassica oleraceaPrunus persica92.6395.2581.94742forward
CNT30410142Brassica oleraceaPapaver somniferum53.5665.280.89429forward
CNT30573979Brassica oleraceaVitis vinifera71.7998.6379.65575forward
CNT30642027Brassica oleraceaCannabis sativa50.9463.9582.6408forward
CNT3028162Brassica oleraceaTheobroma cacao68.4197.6878.83548forward
CNT3051702Brassica oleraceaAmborella trichopoda54.6871.5779438forward
CNT30121049Brassica oleraceaCitrus clementina56.0541.579.73449forward
CNT30330867Brassica oleraceaDioscorea rotundata57.1863.3579.04458forward
CNT30149777Brassica oleraceaBrachypodium distachyon35.8331.1681.88287forward
CNT30577473Brassica oleraceaOryza barthii26.8439.4583.26215forward

Expression of CNT30235097

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MQEKLDCKQVKLDCNSGMLGCSLETLDCSLETLGCS*

>peptide 2 (66 aa)
MGCSLEMKKEKTPFHQHMEKTEHLTLETTAYLDSGGSLGTSCFHDKEFLTLASEQESFQTPVHPYS*

Sequence

>CNT30235097
GTTTGGAGATGTAGGACTGTAAGGGCTAGCTGGTGATAGTCTTGCATTGCTAGGAGAGTAAGCCAGAGATGGACTGTATTTAGCAGACTGAGGGTTGTAG
CTTGGAGATGTCGGACCGTAACTAGGAGACGTTGGACTGTAGCTTGGAGATGTAGGGCTGTAGCCAGGAGACGTAGGGCTGTATGCAGGTGAAGTAGGGC
TGTAAGAAGGAGATGTTGGACTGTAGGAGGGTGAAGTAGGGCTGTAAGAAGGCGATGTCGGACTGTAAGATGGTGAAGTTGGACTGTAAGATGGAGAGGT
AGGGCTGTATGCAGGAGAAGTTGGACTGTAAGCAGGTGAAGTTGGACTGTAACTCGGGGATGTTGGGCTGTAGCTTGGAGACGTTGGACTGTAGCTTGGA
GACGTTGGGCTGTAGCTAGGAGACGTGGGAGAATATGAAGGACTTGTTGGAGAATAAGCAGGGCTAGTTGGGCTATAGCCAGGAGAACTAGGACTGTACG
TGGGAGAAGTGGGACTATAGCCAGGAGAAGTCGGACTGTATCCAGGTGAAGTCGGACTGTAACCAGGAGAAGTAGGACTGTAACCAGGAGAAGATGGGCT
GTAGCCTGGAGATGAAGAAGGAGAAAACGCCATTCCACCAACATATGGAGAAAACTGAGCATCTGACATTGGAGACAACCGCATATTTGGACTCAGGAGG
TAGTTTGGGGACATCATGCTTTCATGATAAGGAGTTCCTGACATTGGCGAGCGAGCAGGAGTCATTCCAAACTCCAGTCCATCCATATAGCTAGGGAGCT
G