« Back to Cynara cardunculus search


Detailed information on CNT30335476


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30700805Cynara cardunculusQuercus lobata23.2193.0780.85282forward
CNT30591858Cynara cardunculusMusa acuminata18.8545.1779.91229forward
CNT30216752Cynara cardunculusKalanchoe fedtschenkoi19.1850.3281.97233forward
CNT30354857Cynara cardunculusLactuca sativa21.9831.0885.77267forward
CNT30641843Cynara cardunculusCannabis sativa9.6324.3288.89117forward

Expression of CNT30335476

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MWVSNSERLGSSWEMWGSSWEMWGSSWERWGSR*

>peptide 2 (29 aa)
MMGRWGCMMVRWGCMLARWGCRQETLGCN*

>peptide 3 (36 aa)
MPSNKSTIEKKAKLSTDSENISKQYTSERRDWHWYL*

>peptide 4 (38 aa)
MADTTVPEKNAVMPVKLLYEICSIVKHKIYRCTCWDCM*

>peptide 5 (38 aa)
MTKYKRQYNLNRLLCNPKGWPHVRFPQALQVTLLAGRI*

Sequence

>CNT30335476
CTGCAGAAACACACAGATATCAATAGTGCCAAGATACAATTAAAATGAGGGTATGAACCTCACTTATGTTTTGATAATATGCATCAAAAAGGTATTGCCT
CCACTTAAAAATAATTGAAAACTAGATAGGCAATGCTAAAATAATGACAAAATATAAGAGACAATATAACCTAAATAGGCTGCTATGCAACCCTAAAGGT
TGGCCTCATGTTAGATTCCCCCAAGCTTTGCAGGTCACCCTGCTGGCAGGAAGAATCTAAAGTTTGTCCAGGCTGAATGGAGTGGTGCTTTATGAACCAC
ATCAACTAGTTAAACAAAAGATGGCAGATACCACAGTTCCAGAAAAAAACGCTGTTATGCCAGTTAAACTGCTTTATGAGATTTGCAGTATAGTGAAGCA
CAAGATATATAGATGTACCTGCTGGGACTGTATGTAGGGCTTGAAGGAGAATAAGATGGAGACGTTGGAGAATATGATGGCGATGTGGGACTGCAAAAAG
GAAGTTCACAACATTTAAAATTATAGTGAGGTAGGAACCACCTGTAAGACCTATGCCAAGTAACAAATCAACTATAGAAAAGAAAGCCAAGTTATCAACC
GACTCAGAGAACATAAGCAAGCAGTACACTTCAGAGAGAAGAGATTGGCACTGGTACCTGTAGTTCGGCGATGTAGGGCTATATGGACTTGAAGGCGATA
GTCTTGGACTACTAGGAGAATAAGCCAGTGACGGGCTGTACTTGGCTGATGACGGATTATAGCTTGGTGAGGTTGGACTGTAGCTAGGTGAAGTAGGACT
GTAGCTAGGTGAAGTAGGACTGTAGCCAGGGGAAGTAGGGCTGTAAGCAGGTGAGGTGGGGCTGTATGATGGGGAGGTGGGGCTGTATGATGGTGAGGTG
GGGCTGTATGCTGGCGAGGTGGGGCTGTAGGCAGGAGACGTTGGGCTGTAACTAGGCGATGTGGGTGAGTAACTCGGAGAGGTTGGGGAGTAGCTGGGAG
ATGTGGGGGAGTAGCTGGGAGATGTGGGGGAGTAGCTGGGAGAGGTGGGGGAGTAGGTAGGACTGGTTGGACTATAACCAGGCGAACTTGGACTGTATGT
TGGCGAGGTCGGACTATAACCAGGTGATGTAGGACTATATCCAGGAGAGGTCGGGCTATAGCCGGGTGAGGTAGGGCTATAGCCAGGAGATGAAGGGCTG
TATCCTGGAGAAGAC