Detailed information on CNT30316024


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSTUT001430, E-value = 2e-43

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30700805Corylus avellanaQuercus lobata37.1498.6883.61299forward
CNT30379142Corylus avellanaManihot esculenta37.5232.3385.76302forward
CNT30195835Corylus avellanaPisum sativum27.0885.8385.32218forward
CNT3091732Corylus avellanaSolanum tuberosum62.7344.3480.59505forward
CNT30398985Corylus avellanaTriticum turgidum25.2231.4283.25203forward
CNT30559586Corylus avellanaActinidia chinensis62.4862.3381.11503forward
CNT30234460Corylus avellanaBrassica oleracea53.9161.7481.11434forward
CNT30312132Corylus avellanaCamelina sativa47.5859.181.98383forward
CNT30607691Corylus avellanaGossypium raimondii51.4361.1581.88414forward
CNT30205370Corylus avellanaHelianthus annuus27.0833.3882.57218forward
CNT30341750Corylus avellanaEragrostis tef28.5742.4482.61230forward
CNT30596739Corylus avellanaOryza meridionalis36.445.0881.23293forward
CNT30370935Corylus avellanaOryza glumipatula38.6332.1380.71311forward
CNT30154935Corylus avellanaPrunus persica42.248083.53340forward
CNT30410142Corylus avellanaPapaver somniferum47.257.7579.47380forward
CNT30120999Corylus avellanaCitrus clementina54.1632.4984.4436forward
CNT30577473Corylus avellanaOryza barthii36.453.7681.23293forward
CNT30335477Corylus avellanaCynara cardunculus45.0995.5380.44363forward

Expression of CNT30316024

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MSGTLGYTLERWGYTQGMTDYSPEMRGCSPVMM*

>peptide 2 (37 aa)
MEKQEKKYPHHWPRQGWNNSAENVIWKCKNDYNQQLA*

>peptide 3 (43 aa)
MWGCMRVMWGCKMGKWGCMPVMWGCMLAKWGCMLGKWGCNLER*

Sequence

>CNT30316024
CCTGAAGATAGATCACCATAGTAATGGAAAAACAAGAAAAAAAATATCCACACCACTGGCCAAGACAGGGATGGAACAATTCAGCTGAAAATGTAATATG
GAAATGTAAGAATGACTACAATCAGCAGCTAGCATAGTCAATCACACATTGGTACCACCAAAATGATCAGCAATTAGGACATTTTGCAACATGGTTTACC
TATAATTAGGAGATGTAGGACTATATGGACTTGACGGTGACAATCTTGGACTACTTGGTGAGTATGCCAGTGAAGGGCTGTACTTCGCCGACTGAGGATT
ATAGCTAGGAGATGTTGGACTATAACTGGGTGAGGTTGGACTATACCCCGGAGATGTGGGGCTATAAGCTGGTGAGGTAGGGCTGTACGAGGGAGATGTG
GGGCTGTATGAGGGTGATGTGGGGCTGTAAGATGGGGAAGTGGGGCTGTATGCCGGTGATGTGGGGCTGTATGCTGGCGAAGTGGGGCTGTATGCTGGGG
AAGTGGGGCTGTAACTTGGAGAGGTAGGGCTGTAAGTTGGAGATGTTGGGCTGTAGCTGGGAGAGGTAGGGCTGTAGCTGGGAGAGGTAGGCGAGTAAGA
TGGACTTGTAGGAGAATAGGCAGGACTGGTTGGGCTATAGCCCGGAGAACTAGGGCTATATGTCGGGGACGTTGGGCTATACCCTGGAGAGGTGGGGCTA
TACCCAGGGGATGACGGACTATAGCCCGGAGATGAGGGGCTGTAGCCCGGTGATGATGTAGGAGAAAAAGCCATTCCACCAACATAAGGAGAAAACTGAG
CATCC