Detailed information on CNT30642028


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000067, E-value = 8e-30

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30536082Cannabis sativaEucalyptus grandis98.8385.4780.83506forward
CNT30700805Cannabis sativaQuercus lobata53.7190.7684.73275forward
CNT30616482Cannabis sativaSesamum indicum83.7928.1383.92429forward
CNT30403468Cannabis sativaBeta vulgaris64.2642.5180.24329forward
CNT30195835Cannabis sativaPisum sativum46.0992.9180.51236forward
CNT30506121Cannabis sativaNicotiana attenuata51.9564.2581.2266forward
CNT30605857Cannabis sativaGossypium raimondii97.6661.6581.4500forward
CNT30625502Cannabis sativaDaucus carota68.1642.8780.8349forward
CNT30354603Cannabis sativaLactuca sativa62.747.4281.93321forward
CNT30408809Cannabis sativaPapaver somniferum92.1954.6380.3472forward
CNT30103004Cannabis sativaOryza rufipogon73.8337.9180.42378forward
CNT30335477Cannabis sativaCynara cardunculus41.0255.2682.38210forward

Expression of CNT30642028

Peptides detected in this lncRNA

>peptide 1 (67 aa)
DYKDWLVATLDCLENKPMMDCILLIEDCNLEMLDYNLVRLGCNLARLDYNQEKLDCRLVKLDYRTEM*

>peptide 2 (57 aa)
MWDCKMGRLGCMLGRWDCKQGKLGCKQVRSDCNLVRLDCNLEMLDCNWVKLDCNLEK*

>peptide 3 (43 aa)
MVMLGCRKVRSGCMRGCGTVRWGGWAVCWGGGTVSRGSWAVSR*

Sequence

>CNT30642028
GGACTATAAGGACTGGCTGGTGGCAACCCTCGACTGCTTGGAGAATAAGCCAATGATGGACTGTATTTTGCTGATTGAGGATTGTAACTTGGAGATGTTG
GACTATAACTTGGTGAGGTTGGGCTGTAACTTGGCGAGGTTGGACTATAACCAGGAGAAGTTGGACTGTAGGCTGGTGAAGTTGGACTATAGGACGGAGA
TGTAGGGCTGTAGGATGGTGATGTTGGGCTGTAGGAAGGTGAGGTCGGGCTGTATGAGGGGATGTGGGACTGTAAGATGGGGAGGTTGGGCTGTATGCTG
GGGAGGTGGGACTGTAAGCAGGGGAAGTTGGGCTGTAAGCAGGTGAGGTCGGACTGTAACTTGGTGAGGTTGGACTGTAACTTGGAGATGTTGGACTGTA
ACTGGGTGAAGTTGGACTGTAACTTGGAGAAGTAGGGCTATAGCTTGGTGATGTGGGTGAATAAGATGGACTTGTAGGAGAATAGGCAGGACTTGTTGGA
CTATAGCCCGGG