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Detailed information on CNT30587569


BLAST search results

BLAST vs Swiss-Prot:
sp|Q07473|CB4A_ARATH, E-value = 1e-40

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695034Musa acuminataOryza sativa33.4317.6991.96112forward
CNT30671994Musa acuminataSetaria viridis30.7516.1790.29103forward
CNT30520570Musa acuminataSetaria italica35.5212.1789.92119forward
CNT30640430Musa acuminataNymphaea colorata34.3325.0587.83115forward
CNT30513329Musa acuminataJuglans regia34.6318.0787.07116forward
CNT30375654Musa acuminataArabidopsis thaliana20.314.0588.2468forward
CNT30500595Musa acuminataCoffea canephora27.1611.9684.6291forward
CNT30276136Musa acuminataChenopodium quinoa22.0914.3787.8474forward
CNT30526506Musa acuminataPhaseolus vulgaris34.639.7986.21116forward
CNT30485914Musa acuminataOlea europaea31.3413.1186.67105forward
CNT30708123Musa acuminataGlycine max76.4219.1681.25256forward
CNT30287394Musa acuminataTriticum aestivum35.5214.2289.08119forward
CNT30221234Musa acuminataHordeum vulgare30.7517.291.26103forward
CNT30387400Musa acuminataTriticum turgidum31.0420.7287.5104forward
CNT30562744Musa acuminataActinidia chinensis30.7516.5988.35103forward
CNT30554457Musa acuminataOryza glaberrima24.486.8390.2482forward
CNT30436081Musa acuminataAegilops tauschii30.7520.1687.38103forward
CNT30244696Musa acuminataAvena sativa71.3445.3585.77239forward
CNT30659169Musa acuminataTriticum dicoccoides35.5215.389.92119forward
CNT30453511Musa acuminataSaccharum spontaneum35.5222.5890.76119forward
CNT30132393Musa acuminataLolium perenne71.3440.7285.36239forward
CNT30229777Musa acuminataAnanas comosus52.2423.8485.14175forward
CNT3067780Musa acuminataLeersia perrieri2014.0291.0467forward
CNT30213985Musa acuminataHelianthus annuus24.1815.2586.4281forward
CNT30680618Musa acuminataTriticum urartu35.5212.3889.92119forward
CNT30338963Musa acuminataEragrostis tef33.7317.0489.38113forward
CNT30620951Musa acuminataCajanus cajan34.0310.9686.84114forward
CNT30596509Musa acuminataOryza meridionalis36.127.9692.56121forward
CNT30360911Musa acuminataLactuca sativa22.9916.9284.4277forward
CNT30370757Musa acuminataOryza glumipatula33.4323.4891.96112forward
CNT30428948Musa acuminataPapaver somniferum31.346.2485.71105forward
CNT3023899Musa acuminataPopulus trichocarpa21.1910.9185.9271forward
CNT30328621Musa acuminataAsparagus officinalis41.4946.6486.33139forward
CNT30120621Musa acuminataCitrus clementina31.3426.9982.86105forward
CNT30147796Musa acuminataBrachypodium distachyon26.2722.1792.0588forward
CNT30102551Musa acuminataOryza rufipogon33.4312.191.96112forward
CNT30577064Musa acuminataOryza barthii24.4810.7390.2482forward
CNT30581265Musa acuminataEchinochloa crusgalli31.9420.5490.65107forward
CNT30496270Musa acuminataDigitaria exilis28.969.8390.7297forward
CNT30117066Musa acuminataOryza nivara33.4316.4291.96112forward
CNT30604352Musa acuminataOryza punctata35.5220.6692.44119forward
CNT30556500Musa acuminataPanicum hallii30.7517.5290.29103forward
CNT30551395Musa acuminataOryza brachyantha29.5511.4391.9299forward
CNT3039307Musa acuminataMarchantia polymorpha22.0922.2989.1974forward

Expression of CNT30587569

Peptides detected in this lncRNA

>peptide 1 (33 aa)
DEDQQEEVAAIKRRRRCQRWWCEVGRSGEWPSC*

>peptide 2 (47 aa)
TRINKKRWLQLRGGEGVKDGGVKWVAQVSGPVVEGTLAGGGGLDSEA*

>peptide 3 (31 aa)
MYPITSTSIHINAVMSKGRERPRYEDPSTNST

Sequence

>CNT30587569
GACGAGGATCAACAAGAAGAGGTGGCTGCAATTAAGAGGAGGAGAAGGTGTCAAAGATGGTGGTGTGAAGTGGGTCGCTCAGGTGAGTGGCCCAGTTGTT
GAGGGGACCCTTGCCGGTGGCGGCGGCCTGGACAGCGAAGCCTAGGAAGGGTCGTCCGCCAGGCCGAGAGGGTCGAAGTACTTGCCGCCGGGGTACAGCC
TCTTCTCCGGGTCGAGCTCTGCGTTCCTCTGGAACTCGATGTACCCTATCACGAGCACCTCGATCCATATCAATGCGGTGATGTCGAAGGGAAGGGAGAG
GCCGAGGTATGAGGACCCATCCACCAACTCTACCT