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Detailed information on CNT30604352


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 1e-19

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695034Oryza punctataOryza sativa42.3638.5597.95244forward
CNT30671994Oryza punctataSetaria viridis20.4918.5297.46118forward
CNT30520570Oryza punctataSetaria italica36.2821.3794.74209forward
CNT30640430Oryza punctataNymphaea colorata35.7644.8886.89206forward
CNT30513329Oryza punctataJuglans regia21.181985.25122forward
CNT3020107Oryza punctataCitrullus lanatus22.0511.185.04127forward
CNT30526506Oryza punctataPhaseolus vulgaris26.9113.0883.87155forward
CNT30485914Oryza punctataOlea europaea2517.9884.03144forward
CNT30708177Oryza punctataGlycine max26.2214.3585.43151forward
CNT30289853Oryza punctataTriticum aestivum34.225.2293.91197forward
CNT30221234Oryza punctataHordeum vulgare28.6527.5595.15165forward
CNT30562752Oryza punctataActinidia chinensis23.2610.5988.81134forward
CNT30587569Oryza punctataMusa acuminata20.6635.5292.44119forward
CNT30244083Oryza punctataAvena sativa43.5851.2290.04251forward
CNT30659938Oryza punctataTriticum dicoccoides26.3928.3692.76152forward
CNT30452520Oryza punctataSaccharum spontaneum33.6812.9494.85194forward
CNT30132393Oryza punctataLolium perenne23.2622.8394.78134forward
CNT30229721Oryza punctataAnanas comosus35.948.8290.82207forward
CNT30219415Oryza punctataKalanchoe fedtschenkoi28.352.2480.37163forward
CNT3067780Oryza punctataLeersia perrieri19.7923.8598.25114forward
CNT30213985Oryza punctataHelianthus annuus22.7424.6782.44131forward
CNT30680618Oryza punctataTriticum urartu36.4621.8591.9210forward
CNT30338969Oryza punctataEragrostis tef30.5628.4396.02176forward
CNT30620951Oryza punctataCajanus cajan26.2214.5284.11151forward
CNT30596509Oryza punctataOryza meridionalis80.3830.4688.77463forward
CNT30360911Oryza punctataLactuca sativa18.0622.8682.69104forward
CNT30370757Oryza punctataOryza glumipatula30.2136.4898.28174forward
CNT30428948Oryza punctataPapaver somniferum26.228.9780.79151forward
CNT30120689Oryza punctataCitrus clementina24.8312.5782.52143forward
CNT3036109Oryza punctataCucumis melo21.5311.9382.26124forward
CNT30147934Oryza punctataBrachypodium distachyon36.4655.1292.38210forward
CNT30102551Oryza punctataOryza rufipogon42.3626.3597.95244forward
CNT30577064Oryza punctataOryza barthii27.4320.6898.1158forward
CNT30581265Oryza punctataEchinochloa crusgalli41.4945.8795.82239forward
CNT30117066Oryza punctataOryza nivara42.5335.9289.8245forward
CNT30556500Oryza punctataPanicum hallii20.1419.7396.55116forward
CNT30551395Oryza punctataOryza brachyantha39.2426.194.69226forward

Expression of CNT30604352

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MARRACLISASCSRSFFSGSDANPSGSKYDPPGYDDPSTSST

>peptide 2 (56 aa)
NICFVHVCIHNHTHLVKYQDQSIDVQVDALIHHLQCSYITNHHHAFKSPLTTNQLS*

Sequence

>CNT30604352
AAATATATGCTTTGTGCATGTGTGCATTCATAATCACACTCACCTAGTCAAATACCAAGATCAATCGATCGATGTACAAGTGGATGCATTAATTCATCAT
CTTCAGTGTTCATATATTACAAATCACCACCATGCATTCAAGTCGCCATTAACCACCAACCAGCTCTCCTAATTTAAGCAGTAATCAACAAAAGGATGAC
CTCTCGCCATACTCTTCCTCGCTCGTCATCACAAAACTAAACCGCGCGTACGTACGCGCGCGCGCGCGAACGCACACCAACGCACGCAAACGCGTCGATC
CCATTTGAATTGCGCGCGAAGTTTTTTAAGAGGAGGAGAAGGTGTCGAAGATGGTGGTGTGGAGCGGGTCGCTGAGGTGAGTAGCCCAGTTGTTGAGGGG
GCCCTTGCCGGTGGCGGCGGCCTGCACGGCGAAGCCGAGGAAGGCGACCATGGCGAGGCGGGCGTGCTTGATCTCCGCCAGCTGCAGCCGCTCCTTCTTC
TCCGGGTCCGACGCCAACCCGAGCGGGTCGAAGTACGATCCCCCCGGGTACGACGACCCATCCACCAGCTCCACCT