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Detailed information on CNT30387400


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF88|CB4B_ARATH, E-value = 3e-34

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30587569Triticum turgidumMusa acuminata20.7231.0487.5104forward
CNT30554318Triticum turgidumOryza glaberrima41.6330.1691.39209forward
CNT30436081Triticum turgidumAegilops tauschii51.9951.0897.7261forward
CNT30659761Triticum turgidumTriticum dicoccoides93.6398.33100470forward
CNT30450549Triticum turgidumSaccharum spontaneum42.4357.5788.73213forward
CNT30132393Triticum turgidumLolium perenne60.7651.9685.25305forward
CNT30720416Triticum turgidumTriticum spelta63.5553.0896.55319forward
CNT30596514Triticum turgidumOryza meridionalis44.0213.8690.5221forward
CNT3039307Triticum turgidumMarchantia polymorpha29.0843.9880.82146forward

Expression of CNT30387400

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MVVCSGSLRRACLISASCRVSFFTGSAASPSGSK*

Sequence

>CNT30387400
TATTTTTGTAATCGCAAAAACGAAACAAAAGATTAGCTCAAGATTGATGTACAAGTGGATGCATTAAGTCACCATTGGTTCATATTTTACAAATCACCAA
GTCCCAGCAGCTCTCCTATGTGATCAGACCTGCATTAATCAACAAAGGATCTTTGCGATACCCTCTCATCCATCACTCGTCATACAAAACCAAAGCACGT
TCGTACACTGACGCGCGTTCGTCCATTTTGCAGCTGAGCTGACAGAAATTGCTCGACCACCGACCACTTAAGAGGAGCCGAAGGTGTCGAAGATGGTGGT
GTGCAGCGGGTCGCTGAGGCGGGCGTGCTTGATCTCCGCCAGCTGCAGAGTCTCCTTCTTCACCGGGTCCGCCGCGAGTCCCAGCGGGTCGAAGTAGGAG
CCACCGGGGTAGAGCCTCCTCTCCGGGTCCAGCTCCGCGTTGCGCTGGAACTCGATGTACCCGATCACCAGCACCTCGATCCAGATCAACGTGGTGAGCG
TG