Detailed information on CNT30229777


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF88|CB4B_ARATH, E-value = 1e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671670Ananas comosusSetaria viridis9.8120.1193.0672forward
CNT30587569Ananas comosusMusa acuminata23.8452.2485.14175forward
CNT30132393Ananas comosusLolium perenne16.2120.2789.92119forward
CNT30338967Ananas comosusEragrostis tef18.6628.0783.94137forward
CNT30370623Ananas comosusOryza glumipatula33.9218.0284.74249forward
CNT3039307Ananas comosusMarchantia polymorpha20.1644.5885.81148forward

Expression of CNT30229777

Peptides detected in this lncRNA

>peptide 1 (80 aa)
MARRACLISASCKVSFFSGSEARPSGSKYFPPGYSLFSGSSSAFRWNSMYPMTRTSIHISVVMEKGRGRPRYEDPSTNST*

>peptide 2 (30 aa)
MHLGRGGGGGGEGVEDGGVEGVTEVSSPVV*

>peptide 3 (44 aa)
MTEIINRSHSTPLIINFISSQINPVLSGLCTPRERDHNEIKLVR*

Sequence

>CNT30229777
CCGAAATGCAAATAGGCGATTAATCAGGTAATAATAGTTAATTTAAAGCTTGTAAAAGCGTTCCAAGTAAAAACATAACATTTTTTACAAGATGACGGAG
ATCATTAATCGATCACACAGTACTCCTCTAATAATTAACTTCATATCCTCACAAATTAATCCAGTTTTGAGTGGACTATGTACTCCAAGAGAGAGAGATC
ACAATGAGATCAAGCTAGTACGGTAACCGTAGGACACCATGCATTTAGGAAGAGGAGGAGGAGGAGGAGGAGAAGGTGTCGAAGATGGTGGTGTGGAGGG
GGTCACTGAGGTGAGTAGCCCAGTTGTTTAGCGGGCCCTTGCCGGTGACGGCGGCTTGGACGGCGAAGCCCAGGAAGGCGACCATGGCGAGGCGACCATG
GCGAGGCGGGCGTGCTTGATCTCGGCCAGCTGCAAGGTTTCCTTCTTCTCCGGGTCGGAGGCGAGGCCCAGCGGGTCGAAGTACTTCCCCCCGGGATACA
GCCTCTTCTCGGGGTCCAGCTCGGCGTTCCGCTGGAACTCGATGTACCCGATGACCAGAACCTCGATCCATATCAGCGTAGTGATGGAGAAAGGAAGAGG
GAGGCCGAGGTACGAAGATCCATCCACCAACTCAACCTGATATATATATATATATACATATATGATCGCGCCTCGTCCAAATTATATAAGGAACATTTCA
TAAATTTGCCATATTCAATTTTCTACATTTGATA