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Detailed information on CNT30659169


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 7e-08

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671994Triticum dicoccoidesSetaria viridis19.5423.8688.16152forward
CNT30520532Triticum dicoccoidesSetaria italica41.939.0485.89326forward
CNT30179479Triticum dicoccoidesSecale cereale38.5643.3599300forward
CNT30290078Triticum dicoccoidesTriticum aestivum46.9247.7799.18365forward
CNT30587569Triticum dicoccoidesMusa acuminata15.335.5289.92119forward
CNT30244040Triticum dicoccoidesAvena sativa44.7345.0292.82348forward
CNT30132393Triticum dicoccoidesLolium perenne49.6165.7687.56386forward
CNT3013737Triticum dicoccoidesZea mays14.0123.3992.66109forward
CNT30229673Triticum dicoccoidesAnanas comosus19.6722.0885.62153forward
CNT30680618Triticum dicoccoidesTriticum urartu45.6336.9499.72355forward
CNT30720416Triticum dicoccoidesTriticum spelta43.4456.2496.45338forward
CNT30338965Triticum dicoccoidesEragrostis tef12.8531.8596100forward
CNT30596550Triticum dicoccoidesOryza meridionalis40.7539.0485.8317forward
CNT30370757Triticum dicoccoidesOryza glumipatula15.5525.3798.35121forward
CNT30148661Triticum dicoccoidesBrachypodium distachyon19.5432.6291.45152forward
CNT30556500Triticum dicoccoidesPanicum hallii15.6820.7597.54122forward

Expression of CNT30659169

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MRPFCGAGSASRVPRNVLAAAATDEAMAARSS*

>peptide 2 (64 aa)
MVVCSGSLRWVAQLLSGPLPVAAACTAKPRKATMARFWARFWSRESTSYCRYSAGFPRPKGSKP*

Sequence

>CNT30659169
GTGGATGCTATTTTTGTAATCGCAAAAACGAAACAAAAGATTAGCTCAAGATTGATGTACAAGTGGATGCATTAAGTCACCATTGGTTCATATTTTACAA
ATCACCAAGTCCCAGCAGCTCTCCTATGTGATCAGACCTGCATTAATCAACAAAGGATCTTTGCGATACCCTCTCATCCATCACTCGTCATACAAAACCA
AAGCACGTTCGTACACTGACGCGCGTTCGTCCATTTTGCAGCTGAGCTGACAGAAATTGCTCGACCACCGACCACTTAAGAGGAGCCGAAGGTGTCGAAG
ATGGTGGTGTGCAGCGGGTCGCTGAGGTGGGTGGCCCAGTTGTTGAGTGGCCCCTTGCCGGTGGCGGCGGCCTGCACGGCGAAGCCGAGGAAGGCGACCA
TGGCGAGGTTCTGGGCCAGGTTCTGGTCCAGGGAGTCCACGTCGTACTGCAGGTACTCCGCGGGCTTCCCGAGGCCGAAGGGGTCGAAGCCGTAGTCGCC
GACGAGCGTGCCGTCGAGGTACTCGGGCGCCTGCGCGCCGGGGAACCACAGCGGCCGGTCGGTGGTCGGGGGCGCCTTGGCCTTCTTCGGCGGGGCCTTC
TTCTTGCCGAAGCCGAACCGCGCCACGATGCGCCCGTTCTGCGGCGCCGGGTCCGCCAGCCGGGTCCCGAGGAACGTGCTCGCCGCGGCGGCCACCGACG
AAGCCATGGCTGCTCGCTCCTCCTAGCTTGTCCTCCTCGGCCTTTGCGTGCGTTGAGGTGGCGGGTGGTGCTGTGGTG