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Detailed information on CNT30276136


BLAST search results

BLAST vs Swiss-Prot:
sp|Q07473|CB4A_ARATH, E-value = 2e-59

BLAST vs NONCODE:
NONPOPT001930, E-value = 3e-11

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520570Chenopodium quinoaSetaria italica32.4317.0881.44167forward
CNT30513329Chenopodium quinoaJuglans regia40.3932.483.17208forward
CNT30500595Chenopodium quinoaCoffea canephora33.422.680.81172forward
CNT30403088Chenopodium quinoaBeta vulgaris25.4430.1893.13131forward
CNT30502928Chenopodium quinoaNicotiana attenuata16.8924.6587.3687forward
CNT30708123Chenopodium quinoaGlycine max21.178.1681.65109forward
CNT30221643Chenopodium quinoaHordeum vulgare15.5320.7386.2580forward
CNT30562751Chenopodium quinoaActinidia chinensis33.7941.8379.31174forward
CNT30587569Chenopodium quinoaMusa acuminata14.3722.0987.8474forward
CNT30243799Chenopodium quinoaAvena sativa32.4326.0581.44167forward
CNT30453511Chenopodium quinoaSaccharum spontaneum32.4331.6982.63167forward
CNT30229721Chenopodium quinoaAnanas comosus34.767.6279.89179forward
CNT30596639Chenopodium quinoaOryza meridionalis20.196.2884.62104forward
CNT30147934Chenopodium quinoaBrachypodium distachyon15.532186.2580forward
CNT30580706Chenopodium quinoaEchinochloa crusgalli26.2121.4380.74135forward
CNT30551395Chenopodium quinoaOryza brachyantha20.7812.3685.05107forward

Expression of CNT30276136

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MLLEGSLKNSATLLRGPFPVAAAWMAKPRKATIARRECLISAS*

Sequence

>CNT30276136
CTGAAATGCACAAGCACAGCTAAATGAGCTAATAACATCCTCATTTATATTGGGGTAGACCAAAAAAGAGAGGGAGGATTATAATGAAAAAGACAAGAAT
ATTAGGAATATAGGAAATATATCAATAACACATACAGAGTACATAGTTGGAATAGTTTAAGATGAAAAGGTTTTGAAAATGTTGTTAGAAGGGTCACTTA
AGAATTCAGCAACATTGCTAAGAGGGCCTTTTCCAGTGGCAGCAGCTTGGATGGCAAAGCCAAGGAAGGCAACCATAGCGAGGCGAGAGTGCTTGATCTC
TGCTAGCTGAAGCCTCTCCTTCTTCTCAGGGTCCGCGGCTAAGCCAAGGGGGTCAAAGTACTGGCCGCCGGGGTATAGGCGCTTCTCTGGGTCAAGCTCT
GCATTCCTCTGGAACTCAATGTATCCAACTAGTAGCACTTCTATCCAGATCAATGTTGTTAGGGAGAATGGCAGTTTTTGGCCTAGGTAGGATGCTCCTT
CAATCAACTCTACCT