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Detailed information on CNT3067780


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695034Leersia perrieriOryza sativa25.5219.2797.54122forward
CNT30520609Leersia perrieriSetaria italica25.5211.1697.54122forward
CNT30640430Leersia perrieriNymphaea colorata23.4324.491.07112forward
CNT3020107Leersia perrieriCitrullus lanatus21.55984.47103forward
CNT30526506Leersia perrieriPhaseolus vulgaris21.768.7883.65104forward
CNT30485914Leersia perrieriOlea europaea20.512.2385.7198forward
CNT30708177Leersia perrieriGlycine max21.769.8987.5104forward
CNT30289853Leersia perrieriTriticum aestivum23.4314.3497.32112forward
CNT30221234Leersia perrieriHordeum vulgare23.4318.797.32112forward
CNT30562752Leersia perrieriActinidia chinensis22.598.5491.67108forward
CNT30587569Leersia perrieriMusa acuminata14.022091.0467forward
CNT30554457Leersia perrieriOryza glaberrima21.768.6687.5104forward
CNT30244332Leersia perrieriAvena sativa23.4313.7898.21112forward
CNT30659938Leersia perrieriTriticum dicoccoides26.5723.6998.43127forward
CNT30452520Leersia perrieriSaccharum spontaneum25.528.1496.72122forward
CNT30229721Leersia perrieriAnanas comosus21.554.3992.23103forward
CNT30213985Leersia perrieriHelianthus annuus20.0818.0885.4296forward
CNT30680618Leersia perrieriTriticum urartu23.4311.6597.32112forward
CNT30338970Leersia perrieriEragrostis tef29.7126.6495.77142forward
CNT30620951Leersia perrieriCajanus cajan21.559.987.38103forward
CNT30596509Leersia perrieriOryza meridionalis25.528.0397.54122forward
CNT30360911Leersia perrieriLactuca sativa20.2921.3282.4797forward
CNT30370757Leersia perrieriOryza glumipatula25.5225.5897.54122forward
CNT30120689Leersia perrieriCitrus clementina21.769.1484.62104forward
CNT3036109Leersia perrieriCucumis melo21.559.9183.5103forward
CNT30147934Leersia perrieriBrachypodium distachyon25.5232.0293.44122forward
CNT30102551Leersia perrieriOryza rufipogon25.5213.1797.54122forward
CNT30577064Leersia perrieriOryza barthii32.6420.4292.95156forward
CNT30580858Leersia perrieriEchinochloa crusgalli25.5220.6497.54122forward
CNT30117066Leersia perrieriOryza nivara21.7615.2587.5104forward
CNT30604352Leersia perrieriOryza punctata23.8519.7998.25114forward
CNT30551395Leersia perrieriOryza brachyantha25.5214.0995.08122forward

Expression of CNT3067780

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MRRRCRRWWVAQLLSGPLPVAAACTAKPRNATMARRACLISASCSRSF

>peptide 2 (40 aa)
MVGGPVVEWALAGGGGLHGEAEERDHGEAGVLDLRQLQPLL

Sequence

>CNT3067780
AAATTAATTAATATCTTAAAGTCGAAAAATTAATTTTATAAATTCTAAGAAAAACATGGAGAAAGTTTTTTTTTTATAAATTTGTATCGTCTAGGAACTC
AATCCATCGATGTACAAGAGGACGCATTAATTCATCATCTTCGGTTTCATATATTACAAAGCACCATGCAAAGTCACCATTAACCACCACACCAAGCTCT
CCTAAGTAATAATCAACAAAGGATCCCCTCTCTCCCTCTCTACCATTGCTCGTCACAAAACGCACGGCGATCGACCGAACGCATGCATCTGTTCAACGCA
CACATGCACAAATCGATCCAAATTAATTAAGACGATGAGGAGAAGGTGTCGAAGATGGTGGGTGGCCCAGTTGTTGAGTGGGCCCTTGCCGGTGGCGGCG
GCCTGCACGGCGAAGCCGAGGAACGCGACCATGGCGAGGCGGGCGTGCTTGATCTCCGCCAGCTGCAGCCGCTCCTTC