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Detailed information on CNT30640430


BLAST search results

BLAST vs Swiss-Prot:
sp|Q07473|CB4A_ARATH, E-value = 1e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695034Nymphaea colorataOryza sativa43.7931.7587.56201forward
CNT30513329Nymphaea colorataJuglans regia26.581985.25122forward
CNT3020107Nymphaea colorataCitrullus lanatus27.6711.181.1127forward
CNT30221234Nymphaea colorataHordeum vulgare31.8124.3788.36146forward
CNT30562752Nymphaea colorataActinidia chinensis29.1910.5988.06134forward
CNT30587569Nymphaea colorataMusa acuminata25.0534.3387.83115forward
CNT30244332Nymphaea colorataAvena sativa32.4618.3388.59149forward
CNT30133575Nymphaea colorataLolium perenne23.3116.8289.72107forward
CNT3067780Nymphaea colorataLeersia perrieri24.423.4391.07112forward
CNT30338969Nymphaea colorataEragrostis tef39.4329.2486.74181forward
CNT30620951Nymphaea colorataCajanus cajan30.9413.6586.62142forward
CNT30360911Nymphaea colorataLactuca sativa31.3731.6581.25144forward
CNT30370757Nymphaea colorataOryza glumipatula37.9136.4887.93174forward
CNT30120689Nymphaea colorataCitrus clementina28.3211.4285.38130forward
CNT30147934Nymphaea colorataBrachypodium distachyon41.8350.3986.46192forward
CNT30102551Nymphaea colorataOryza rufipogon43.7921.7187.56201forward
CNT30581265Nymphaea colorataEchinochloa crusgalli42.4837.4388.21195forward
CNT30117066Nymphaea colorataOryza nivara23.9716.1390110forward
CNT30604352Nymphaea colorataOryza punctata44.8835.7686.89206forward
CNT30556500Nymphaea colorataPanicum hallii2217.1890.1101forward

Expression of CNT30640430

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MVVWRGSLKWVAQLLRGPLPVAAAWTAKPRNPIIASRACLISASCSWLFFSGSDASPSGSKGPPGAGRGWT*

>peptide 2 (55 aa)
VQVQLGGNEGRLGRRGKGVEDGGVERIAQVGGPVVERALAGGSCLDGEAQEPDHC*

>peptide 3 (34 aa)
TSSTRGKRRASRKKRKRCRRWWCGEDRSSGWPSC*

Sequence

>CNT30640430
GTACAAGTTCAACTCGGGGGAAACGAAGGGCGTCTAGGAAGAAGAGGAAAAGGTGTCGAAGATGGTGGTGTGGAGAGGATCGCTCAAGTGGGTGGCCCAG
TTGTTGAGAGGGCCCTTGCCGGTGGCAGCTGCCTGGACGGCGAAGCCCAGGAACCCGATCATTGCTAGCCGGGCGTGCTTGATCTCCGCCAGCTGCAGCT
GGCTCTTCTTCTCCGGGTCGGACGCCAGCCCCAGTGGGTCGAAGGGGCCGCCAGGGGCTGGAAGGGGGTGGACTTGACGTCCGAGCTCTCGAACCTGGTG
CCGATGATGTCACCCGCTGGGTTCTTGGCCAGGCCGAAGGGATCGAAGCCGTAGTCGCCGACAAGAGTGCCGTCCAGCCATTCGGGGGCCTTGGCTCCAG
GGAACCAGAGGGGCCTGTCCGACACCACCCTTTTGGGCGACGACTTCTTCACCGTCTTC